fomightez Goto Github PK

2017-05-04-suny-upstate

3dscatter_plot-binder

3D scatter plot examples via Binder

3dscatter_plot_mod_playground-binder

Playground to test 3D scatter plot examples in modern JupyterLab and Jupyter Notebook via Binder

3dsurface_plot-binder

3D surface plot examples via Binder

alien-life

Binderizing Nicolas' remake of necessary disorrder beautiful animation

animated_matplotlib-binder

Notebook to demonstrate animated plots with Matplotlib in JupyterLab and Jupyter Notebook 7+ served via MBinder system.

animated_matplotlib_classic-binder

Notebook to demonstrate animated plots with Matplotlib in classic Jupyter notebook interface & NbClassic served via MyBinder system.

animatepymolwithjmol

Easily animate PyMOL session scenes with Jmol to create an animated GIF.

apilogicservertutorial

Jupyter Lab Notebook for API Logic Server

appmode

Creating web applications with Jupyter and Binder

appmode_plus

b-roll-binder

'for the future when the camera crew wants B-roll and asks you to sit at your desk "doing bioinformatics"'

back_to_ipynb

Conversion of the HTML representation of Jupyter notebook back to an `.ipynb` file

bear-classifier

benchmarks

Comparison tools

bendit-binder

Bend.it software to predict DNA curvature combined with Jupyter ecosystem served via MyBinder.org

bernbiopython

Bernhard10's personal fork of biopython where he added parsing of missing residues from PDB header

binder

Adds binder to tidyverse, providing JupyterHub

binder_trial

binderized-dockerfile-rstudio

Using RStudio served via Binder that runs with my favorite bioinformatics packages.

binderized-gwascat

Using RStudio served via Binder that runs the gwascat package

binderized-ridgeline

running ridgeline plots in R in Jupyter environment served by MyBinder.org

bio3d-binder

launchable, working Jupyter-baseed environment with bio3d package for Biological Structure Analysis running in RStudio with some examples

bioinformatics_software_compatibility

Details of compatibility of software commonly used in tandem

bioptools-binder

bioptools available in Jupyter session served via myBinder.org

biopython

Official git repository for Biopython (originally converted from CVS)

biopython-notebook

Notebooks to introduce biopython

birch-binder

attempt to make binderized BIRCH, see http://home.cc.umanitoba.ca/~psgendb/

blast-binder

Repo for running command line-based BLAST in Jupyter environment provided via Binder.

blast29-binder

Repo for running command line-based BLASTv2.9 in Jupyter environment provided via Binder.