Wayne's Bioinformatics Code Portal's Projects
Unsupervised Machine Learning: Nonnegative Matrix Factorization + k-means clustering
Run Plotly's Orca on MyBinder without a Dockerfile
Utilities for working with JupyterLite
Repo for running command line-based PatMatch in Jupyter environment provided via Binder.
Using data from PDBePISA with the convenience of Python and Jupyter.
Demonstrating analysis of PDBsum-related data via active Jupyter sessions provided via MyBinder.org
Bootstrap 3 theme for Pelican
configuration of pelican I have put together
A simple demonstration of the ways in which p-values do not tell a lot of information about the underlying data
Launches an environment set up to make it easy to extract GPS coordinates from photo metadata.
Draw images in your ANSI terminal with true color
Data processing steps made easy.
A Python utility to digitize plots.
Python-based PlotDigitizer working 'headless' in sessions served via MyBInder.org
Python-based PlotDigitizer working alongside Qt on desktop in sessions served via MyBinder.org
Tool to plot synteny and structural rearrangements between genomes
Repository for Programming Assignment 2 for R Programming on Coursera
For utilities and code dealing with proteomics analysis
Accompanying material for my patmatch-binder repo
Browser based application for viewing bam alignments
A Python Companion for the Handbook of Biological Statistics
Python module for the easy handling and analysis of DNase-seq data
PyMOL able to be run via MyBinder.org
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
All the cool people are trying pyscript.
Python basics continued for Upstate Medical Spring 2020 nanocourse.
https://github.com/fomightez/Python_basics_4nanocourse withe RISE slideshow ability as well.
development repo for Skewedf with Python