Wayne's Bioinformatics Code Portal's Projects
R and Bioconductor compatibility
Using ggtree to build phylogenetic trees
Launchable via MyBinder version of RNArtistCore, see https://github.com/fjossinet/RNArtistCore
Docker container for RNA-seq pipeline as described in Wang et al 2016 PMID:26483013
WIP On-demand environments for learners who were unable to install software
AI framework for Reinforcement Learning, Automated Planning and Scheduling
programs and scripts, mainly python, for analyses related to nucleic or protein sequences
A repository for code that generates various simulated data.
A tool facilitating designing a pilot experiment to screen for protein precipitation conditions.
fixes SPARTAN08 output in so-called PDB format to be true PDB format
Official repository for Spyder - The Scientific Python Development Environment
Jos Stam's Stable Fluids adapted to Python 3
This repo is used to create a fully functional Rstudio environment for computation see https://discourse.jupyter.org/t/binder-from-github-dockerfile-not-starting-rstudio/7986/4?u=fomightez
programs and scripts for molecular structure analysis
SynChro software available in a Jupyter environment running via the Binder service
helping Voila work on MyBinder
Test if installing Python 3.9 works to answer to allow a package to install, see https://stackoverflow.com/q/72788462/8508004
testing hosting page using jmol 14.1.6 on my github.io / gh-pages site ; jmol 14.1.6 downloaded from http://chemapps.stolaf.edu/jmol/jsmol/test2.htm . Link to test page is --->
testing if jupyterlab gets installed
Test a direct copy of the binder example r template
testing binder where have runtime and requirements.txt
general text mining and text manipulation with Python scripts
Simple JupyterHub distribution for 1-100 users on a single server
Tophat2 and Bowtie compatibility
helpful tips for working with Unipro's UGENE sequence analysis software
Upstate Medical GS647-021 Nanocourse: Structuring against Coronavirus
Upstate Summer Career Awareness 2016 Exercise
Some simple utility notebooks
React
Typescript
Django
Laravel
Facebook
Microsoft
Google
Alibaba
D3
Tencent