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jupyter-remote-desktop-proxy

Run a Linux Desktop on a JupyterHub

jupyter-rise

Auto-launching the RISE plugin for Binder presentations.

jupyter-rise-r

Jupyter-RISE with an R kernel available.

jupyter-rise_with-hide_code

Jupyter-rise working via MyBinder with hide_code enabled.

jupyter_hide_code

Jupyter working via MyBinder with hide_code enabled.

jupyter_nb_basics

Very basic notebook to highlight some features of Jupyter Notebooks. Used on Retreat poster 2016.

khmer

my fork of khmer -- with improved handling of fastq entries on the 'FixSomeFastqHandling Aspects' branch. Former info -->in-memory k-mer counting

length_binder

Use Jupyter environment to look at protein length for various organisms. Active form served via Binder system.

lrsday

LRSDAY: Long-read Sequencing Data Analysis for Yeasts

mar2015feng_gr_m

March 2015 Feng Lab group meeting - A Data Scientist's Toolbox for ChIP-Seq and Beyond

marchmadnessmontecarlo

Python Monte Carlo

markdown-guide

This is an easy-to-use guide to markdown. The focus is on clear, legible text and indexed navigation to topic sections.

marnineteenth_slides

slides for presentation for Feng Lab group meeting

may2015feng_gr_m

May 2015 hands-on workshop on ChIP-seq for Feng Lab group meeting

mayfourteenth_slides

slides for ChIP-seq hands-on workshop for Feng Lab group meeting

mcscan-binder

MCscan software available in a Jupyter environment running via the Binder service

mcscan-blast-binder

MCscan software and command line-based BLAST available in a Jupyter environment running via the Binder service

methods_in_yeast_genetics

a collection of Jupyter notebooks for doing calculations related to Methods in Yeast Genetics book

mfannot-binder

MFannot software available in a Jupyter environment running via the MyBinder service.

mini-pipelines

collection of scripts that chain together other scripts by preparing and processing/transforming data.

minidbg

Example solution for the De Bruijn Graph assembly problem

modal_labs_test

testing code at modal labs

modelit-binder

Model.it software to produce a 3D model of DNA in bent confirmation combined with Jupyter ecosystem and PyMOL served via MyBinder.org

muscle-binder

Binderized MUSCLE: multiple sequence alignment with high accuracy and high throughput

my_second_binder

nmfk.jl

Unsupervised Machine Learning: Nonnegative Matrix Factorization + k-means clustering

orca-plotly-binderized

Run Plotly's Orca on MyBinder without a Dockerfile

patmatch-binder

Repo for running command line-based PatMatch in Jupyter environment provided via Binder.

pdbepisa-binder

Using data from PDBePISA with the convenience of Python and Jupyter.

pdbrenum