Topic: nextflow Goto Github
Some thing interesting about nextflow
Some thing interesting about nextflow
nextflow,Simple test framework for Nextflow pipelines
Organization: askimed
Home Page: https://www.nf-test.com
nextflow,FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. :whale::package:
Organization: assemblerflow
nextflow,A flexible pipeline for complete analysis of bacterial genomes
Organization: bactopia
Home Page: https://bactopia.github.io
nextflow,How to integrate subscriptions into your Next.js project (/app). The tutorial utilizes Next.js (v13.4) with the /app directory structure, NextAuth v4 for authentication, Prisma for database management, and Stripe for payment processing.
User: bastidanicolas
Home Page: https://nextauth-prisma-stripe.vercel.app
nextflow, Nextflow pipeline for analysis of direct RNA Nanopore reads
Organization: biocorecrg
Home Page: https://biocorecrg.github.io/master_of_pores/
nextflow,GATK RNA-Seq Variant Calling in Nextflow
Organization: crg-cnag
nextflow,Tips for Nextflow and cheatsheet for channel operation
User: danrlu
nextflow,Our VM/Docker sharing infrastructure and management component
Organization: dockstore
Home Page: https://dockstore.org/
nextflow,VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
Organization: ebi-metagenomics
nextflow,Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
User: fmalmeida
Home Page: https://bacannot.readthedocs.io/en/latest/
nextflow,Configure workflow/pipeline tests using yaml files.
Organization: lumc
Home Page: https://pytest-workflow.readthedocs.io/en/stable/
nextflow,AWS for Bioinformatics Researchers
User: lynnlangit
nextflow,GCP for Bioinformatics Researchers
User: lynnlangit
Home Page: https://www.youtube.com/playlist?list=PL4Q4HssKcxYvcixWS08UFaYIH7y4IAV0z
nextflow,A curated list of nextflow based pipelines
Organization: nextflow-io
nextflow,A DSL for data-driven computational pipelines
Organization: nextflow-io
Home Page: http://nextflow.io
nextflow,A curated collection of Nextflow implementation patterns
Organization: nextflow-io
Home Page: http://nextflow-io.github.io/patterns/
nextflow,A proof of concept of RNAseq pipeline
Organization: nextflow-io
nextflow,Nextflow training material
Organization: nextflow-io
Home Page: https://training.nextflow.io/
nextflow,Amplicon sequencing analysis workflow using DADA2 and QIIME2
Organization: nf-core
Home Page: https://nf-co.re/ampliseq
nextflow,ATAC-seq peak-calling and QC analysis pipeline
Organization: nf-core
Home Page: https://nf-co.re/atacseq
nextflow,ChIP-seq peak-calling, QC and differential analysis pipeline.
Organization: nf-core
Home Page: https://nf-co.re/chipseq
nextflow,Config files used to define parameters specific to compute environments at different Institutions
Organization: nf-core
Home Page: https://nf-co.re
nextflow,Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.
Organization: nf-core
Home Page: https://nf-co.re/cutandrun
nextflow,A fully reproducible and state-of-the-art ancient DNA analysis pipeline
Organization: nf-core
Home Page: https://nf-co.re/eager
nextflow,Analysis of Chromosome Conformation Capture data (Hi-C)
Organization: nf-core
Home Page: https://nf-co.re/hic
nextflow,Assembly and binning of metagenomes
Organization: nf-core
Home Page: https://nf-co.re/mag
nextflow,Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
Organization: nf-core
Home Page: https://nf-co.re/methylseq
nextflow,Call and score variants from WGS/WES of rare disease patients.
Organization: nf-core
Home Page: https://nf-co.re/raredisease
nextflow,RNA-seq analysis pipeline for detection of gene-fusions
Organization: nf-core
Home Page: https://nf-co.re/rnafusion
nextflow,Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Organization: nf-core
Home Page: https://nf-co.re/sarek
nextflow,A single-cell RNAseq pipeline for 10X genomics data
Organization: nf-core
Home Page: https://nf-co.re/scrnaseq
nextflow,Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Organization: nf-core
Home Page: https://nf-co.re/taxprofiler
nextflow,Test data to be used for automated testing with the nf-core pipelines
Organization: nf-core
Home Page: https://nf-co.re
nextflow,Assembly and intrahost/low-frequency variant calling for viral samples
Organization: nf-core
Home Page: https://nf-co.re/viralrecon
nextflow,Lint, format and auto-fix your Groovy / Jenkinsfile / Gradle files using command line
User: nvuillam
Home Page: https://nvuillam.github.io/npm-groovy-lint/
nextflow,VSCode extension to lint , correct and format groovy and Jenkinsfile
User: nvuillam
Home Page: https://nvuillam.github.io/vscode-groovy-lint/
nextflow,The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
Organization: pgscatalog
Home Page: https://pgsc-calc.readthedocs.io/en/latest/
nextflow,WtP: Phage identification via nextflow and docker or singularity
User: replikation
Home Page: https://mult1fractal.github.io/wtp-documentation/
nextflow,Nextflow Tower system
Organization: seqeralabs
Home Page: https://tower.nf
nextflow,Example Nextflow pipelines and programming techniques
User: stevekm
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