Topic: nanopore Goto Github
Some thing interesting about nanopore
Some thing interesting about nanopore
nanopore,pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)
User: a-slide
Home Page: https://a-slide.github.io/pycoQC/
nanopore,Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
Organization: ablab
Home Page: https://ablab.github.io/IsoQuant/
nanopore,An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
User: adnaniazi
Home Page: https://www.cbu.uib.no/valen/
nanopore,[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads
Organization: chanzuckerberg
nanopore,Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
Organization: comprna
nanopore,Genomic neighbor typing of bacterial pathogens using MinHash :rat:
User: esteinig
nanopore,Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
User: fmalmeida
Home Page: https://mpgap.readthedocs.io/en/latest/
nanopore,Structural variation caller using third generation sequencing
User: fritzsedlazeck
nanopore,Long-reads Gap-free Chromosome-scale Assembler
Organization: ganlab
nanopore,A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.
Organization: genetalks
nanopore,Snakemake pipelines for nanopore sequencing data archiving and processing
User: giesselmann
nanopore,Nanopore raw signal repeat detection pipeline
User: giesselmann
nanopore,A curated list of awesome nanopore analysis tools.
Organization: goekelab
nanopore,Reference-guided transcript discovery and quantification for long read RNA-Seq data
Organization: goekelab
nanopore,Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
Organization: goekelab
nanopore,Identification of differential RNA modifications from nanopore direct RNA sequencing
Organization: goekelab
Home Page: https://xpore.readthedocs.io/
nanopore,a tool for simulating nanopore raw signal data
User: hasindu2008
Home Page: https://hasindu2008.github.io/squigulator
nanopore,Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
Organization: hku-bal
nanopore,ClairS - a deep-learning method for long-read somatic small variant calling
Organization: hku-bal
nanopore,Recentrifuge: robust comparative analysis and contamination removal for metagenomics
User: khyox
Home Page: http://www.recentrifuge.org
nanopore,PEPPER-Margin-DeepVariant
User: kishwarshafin
nanopore,A PyTorch Basecaller for Oxford Nanopore Reads
Organization: nanoporetech
Home Page: https://nanoporetech.com/
nanopore,Oxford Nanopore's Basecaller
Organization: nanoporetech
Home Page: https://nanoporetech.com/
nanopore,Sequence correction provided by ONT Research
Organization: nanoporetech
Home Page: https://nanoporetech.com
nanopore,A bioinformatics tool for working with modified bases
Organization: nanoporetech
Home Page: https://nanoporetech.com/
nanopore,Tools to annotate genomes using long read transcriptomics data
Organization: nanoporetech
nanopore,Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
Organization: nanoporetech
nanopore,Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
Organization: nanoporetech
nanopore,Pod5: a high performance file format for nanopore reads.
Organization: nanoporetech
Home Page: https://pod5-file-format.readthedocs.io/
nanopore,A tool to identify, orient, trim and rescue full length cDNA reads
Organization: nanoporetech
nanopore,Methylation/modified base calling separated from basecalling.
Organization: nanoporetech
Home Page: https://nanoporetech.com
nanopore,Research release basecalling models and configurations
Organization: nanoporetech
Home Page: https://nanoporetech.com/
nanopore,Tools and software library developed by the ONT Applications group
Organization: nanoporetech
nanopore,Simple bacterial assembly and annotation pipeline
Organization: nf-core
Home Page: https://nf-co.re/bacass
nanopore,Assembly and binning of metagenomes
Organization: nf-core
Home Page: https://nf-co.re/mag
nanopore,Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Organization: nf-core
Home Page: https://nf-co.re/taxprofiler
nanopore,Assembly and intrahost/low-frequency variant calling for viral samples
Organization: nf-core
Home Page: https://nf-co.re/viralrecon
nanopore,Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
Organization: novoalab
nanopore,Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
Organization: parklab
nanopore,SquiggleKit: A toolkit for manipulating nanopore signal data
User: psy-fer
nanopore,RNA modifications detection from Nanopore dRNA-Seq data
User: tleonardi
Home Page: https://nanocompore.rna.rocks
nanopore,A fast tool for hybrid genome assembly of long and short reads
Organization: vpc-ccg
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