Topic: dna Goto Github
Some thing interesting about dna
Some thing interesting about dna
dna,GENA-LM is a transformer masked language model trained on human DNA sequence.
Organization: airi-institute
Home Page: https://www.biorxiv.org/content/10.1101/2023.06.12.544594
dna,tools for reading, writing, merging, and remapping SNPs
User: apriha
dna,A Go package for engineering organisms.
Organization: bebop
Home Page: https://pkg.go.dev/github.com/bebop/poly
dna,[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
Organization: biojulia
Home Page: http://biojulia.dev
dna,Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
User: biologyguy
dna,Official git repository for Biopython (originally converted from CVS)
Organization: biopython
Home Page: http://biopython.org/
dna,Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
User: bjornfjohansson
dna,A package for designing compact and comprehensive capture probe sets.
Organization: broadinstitute
dna,Official code repository for GATK versions 4 and up
Organization: broadinstitute
Home Page: https://software.broadinstitute.org/gatk
dna,[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads
Organization: chanzuckerberg
dna,A fast 23andMe genome text file parser, now superseded by arv
User: cslarsen
dna,In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
Organization: dib-lab
Home Page: http://khmer.readthedocs.io/
dna,A tool to map bisulfite converted sequence reads and determine cytosine methylation states
User: felixkrueger
Home Page: http://felixkrueger.github.io/Bismark/
dna,Data intensive science for everyone.
Organization: galaxyproject
Home Page: https://galaxyproject.org
dna,A course on genomics and bioinformatics from WU
Organization: genome
dna,DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal sequencing data.
Organization: google
dna,DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Organization: google
dna,Python and C++ code for reading and writing genomics data.
Organization: google
dna,🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
Organization: instadeepai
Home Page: https://www.biorxiv.org/content/10.1101/2023.01.11.523679v2
dna,FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.
User: josiahseaman
dna,Raw dump of Kenneth Reitz's DNA Sequence, Ancestry, Genealogy, &c.
User: kennethreitz
Home Page: https://context.kennethreitz.org/
dna,Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences
User: kirillkryukov
Home Page: http://kirill-kryukov.com/study/naf/
dna,nucleic acid folding
Organization: lattice-automation
dna,a JavaScript DNA, RNA, and protein sequence viewer
Organization: lattice-automation
Home Page: https://tools.latticeautomation.com/seqviz
dna,Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Organization: lightdock
Home Page: https://lightdock.org/
dna,[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
Organization: magics-lab
dna,DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models
Organization: magics-lab
dna,Generate input parameters and coordinates for atomistic and coarse-grained simulations of polymers, ssDNA, and carbohydrates
Organization: marrink-lab
dna,Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
Organization: nextstrain
Home Page: https://clades.nextstrain.org
dna,Precision HLA typing from next-generation sequencing data
Organization: nf-core
Home Page: https://nf-co.re/hlatyping
dna,G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.
User: openhero
dna,3d engine implementation in DNA code!
User: pallada-92
Home Page: https://observablehq.com/@pallada-92/3d-engine-in-dna-code
dna,A curated list of awesome personal genomics software, libraries, and educational resources.
User: plashchynski
dna,Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly
Organization: ratschlab
Home Page: http://metagraph.ethz.ch
dna,Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
Organization: rosettacommons
Home Page: https://rosettacommons.github.io/PyRosetta.notebooks/
dna,Genomic Pre-trained Network
Organization: songlab-cal
Home Page: https://doi.org/10.1073/pnas.2311219120
dna,16,432 Free Yara rules created by
Organization: supportintelligence
Home Page: http://icewater.io
dna,UGENE is free open-source cross-platform bioinformatics software
Organization: ugeneunipro
Home Page: http://ugene.net
dna,Revolutionizing DNA analysis and making it accessible to all through innovative AI-powered analysis and interpretive tools.
User: verisimilitudex
dna,tools for working with genome variation graphs
Organization: vgteam
Home Page: https://biostars.org/tag/vg/
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