Topic: nextstrain Goto Github
Some thing interesting about nextstrain
Some thing interesting about nextstrain
nextstrain,Repository for Allergy Immunology and Cell Biology Unit (AICBU), University of Sri Jayewardenepura, Sri Lanka.
User: aicbu
nextstrain,Nextstrain build configuration for maintaining https://nextstrain.org/community/aicbu/ncov/srilanka
User: aicbu
nextstrain,Collective list of active repositories providing tracking as well as datasets to defeat and restrict the widespread of Novel CoronaVirus
User: ashutoshanand13
nextstrain,Nextflow pipeline for generation of BCCDC routine SARS-CoV-2 phylogenetic trees to be visualized with Auspice.
Organization: bccdc-phl
nextstrain,Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.
Organization: bccdc-phl
nextstrain,Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.
Organization: hodcroftlab
Home Page: https://covariants.org/
nextstrain,gentoo portage overlay for nextstrain.org/ncov building.
User: leonbernieniv
nextstrain,Parallelization of Nextstrain builds and parameter testing using Nextflow
User: matt-sd-watson
Home Page: https://matt-sd-watson.github.io/nextflow_for_nextstrain/
nextstrain,interactive maximum-likelihood phylogenies for SARS-CoV-2 genomes and variants of concern from Bangladesh
User: nahid18
nextstrain,BA.2.86 project with Sigal lab
Organization: neherlab
Home Page: https://nextstrain.org/groups/neherlab/ncov/BA.2.86
nextstrain,
Organization: neherlab
nextstrain,Spike-only SARS-CoV-2 Nextstrain build
Organization: neherlab
Home Page: https://nextstrain.org/groups/neherlab/ncov/spike-only
nextstrain,Nextstrain build for avian influenza viruses
Organization: nextstrain
Home Page: http://nextstrain.org/avian-flu
nextstrain,Conda package build for nextstrain-base
Organization: nextstrain
Home Page: https://anaconda.org/Nextstrain/nextstrain-base
nextstrain,Nextstrain build for dengue virus
Organization: nextstrain
Home Page: https://nextstrain.org/dengue
nextstrain,SARS-CoV-2 variant growth rates and frequency forecasts
Organization: nextstrain
Home Page: https://nextstrain.org/sars-cov-2/forecasts/
nextstrain,Nextstrain build for Lassa virus
Organization: nextstrain
Home Page: https://nextstrain.org/lassa
nextstrain,Nextstrain build for measles virus
Organization: nextstrain
Home Page: https://nextstrain.org/measles
nextstrain,Nextstrain build for mpox virus
Organization: nextstrain
Home Page: https://nextstrain.org/mpox
nextstrain,Nextstrain build for novel coronavirus SARS-CoV-2
Organization: nextstrain
Home Page: https://nextstrain.org/ncov
nextstrain,Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain
Organization: nextstrain
Home Page: https://ncov-clades-schema.vercel.app/
nextstrain,A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.
Organization: nextstrain
nextstrain,Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
Organization: nextstrain
Home Page: https://clades.nextstrain.org
nextstrain,
Organization: nextstrain
Home Page: https://nextstrain.org/rabies
nextstrain,Workflow for RSV analyses on Nextstrain.org
Organization: nextstrain
Home Page: https://nextstrain.org/rsv
nextstrain,Nextstrain build for seasonal coronaviruses
Organization: nextstrain
Home Page: https://nextstrain.org/seasonal-cov/
nextstrain,Scripts. config, and snakefiles for seasonal-flu nextstrain builds
Organization: nextstrain
nextstrain,Nextstrain build for Zika virus
Organization: nextstrain
Home Page: https://nextstrain.org/zika
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