Topic: computational-biology Goto Github
Some thing interesting about computational-biology
Some thing interesting about computational-biology
computational-biology,WebGL accelerated JavaScript molecular graphics library
Organization: 3dmol
computational-biology,Protein Graph Library
User: a-r-j
Home Page: https://graphein.ai/
computational-biology,Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting file formats and analyzing the results.
User: angelruizmoreno
computational-biology,Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
User: aquaskyline
computational-biology,Next generation sequencing reads de novo assembler.
User: aquaskyline
computational-biology,A publicly-editable collection of open computational neuroscience resources
User: asoplata
computational-biology,A Go package for engineering organisms.
Organization: bebop
Home Page: https://pkg.go.dev/github.com/bebop/poly
computational-biology,Ten Quick Tips for Deep Learning in Biology
User: benjamin-lee
Home Page: https://benjamin-lee.github.io/deep-rules/
computational-biology,Working with molecular structures in pandas DataFrames
Organization: biopandas
Home Page: https://BioPandas.github.io/biopandas/
computational-biology,Syntax highlighting for computational biology
Organization: biosyntax
Home Page: http://bioSyntax.org
computational-biology,A comprehensive library for computational molecular biology
Organization: biotite-dev
Home Page: https://www.biotite-python.org
computational-biology,A Curated List of Computational Biology Datasets Suitable for Machine Learning
User: blengerich
computational-biology,Spatial alignment of single cell transcriptomic data.
Organization: broadinstitute
computational-biology,Python Programming for Biologists
User: burkesquires
computational-biology,Ptera Software is a fast, easy-to-use, and open-source software package for analyzing flapping-wing flight.
User: camurban
computational-biology,Infectious Disease Sequencing Platform
Organization: chanzuckerberg
Home Page: https://czid.org/
computational-biology,Chaste - Cancer Heart And Soft Tissue Environment - main public repository.
Organization: chaste
Home Page: https://chaste.github.io/
computational-biology,pythonic interface to virtual screening software
Organization: coleygroup
computational-biology,List of Computer Science courses with video lectures.
User: developer-y
computational-biology,A list of schools and researchers in computational neuroscience
User: eselkin
computational-biology,Python3 binding to mRMR Feature Selection algorithm (currently not maintained)
User: fbrundu
computational-biology,:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
User: franciscozorrilla
Home Page: https://franciscozorrilla.github.io/metaGEM/
computational-biology,Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
User: gcorso
Home Page: https://arxiv.org/abs/2210.01776
computational-biology,Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling
Organization: hku-bal
computational-biology,Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
Organization: hku-bal
computational-biology,Race and ethnicity Imputation from Disease history with Deep LEarning
User: jisungk
Home Page: https://riddle.ai
computational-biology,Predicting protein structure through sequence modeling
User: jonathanking
computational-biology,Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)
User: ketatam
Home Page: https://arxiv.org/abs/2304.03889
computational-biology,OpenChem: Deep Learning toolkit for Computational Chemistry and Drug Design Research
User: mariewelt
Home Page: https://mariewelt.github.io/OpenChem/
computational-biology,Deep learning meets molecular dynamics.
Organization: markovmodel
computational-biology,Code and resources for the EPSRC BioSimSpace project.
Organization: michellab
Home Page: https://biosimspace.org
computational-biology,Implementation of GeoDiff: a Geometric Diffusion Model for Molecular Conformation Generation (ICLR 2022).
User: minkaixu
computational-biology,A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences
User: mrzresearcharena
Home Page: http://rafsanjani.pythonanywhere.com/
computational-biology,Variational Autoencoder for Dimensionality Reduction of Time-Series
Organization: msmbuilder
computational-biology,DANCE: a deep learning library and benchmark platform for single-cell analysis
Organization: omicsml
Home Page: https://pydance.readthedocs.io
computational-biology,COBRApy is a package for constraint-based modeling of metabolic networks.
Organization: opencobra
Home Page: http://opencobra.github.io/cobrapy/
computational-biology,SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.
Organization: opensim-org
Home Page: https://opensim.stanford.edu
computational-biology,A curated list of awesome computational cryo-EM methods.
User: phonchi
computational-biology,Interactive network visualization in Python and Dash, powered by Cytoscape.js
Organization: plotly
Home Page: https://dash.plot.ly/cytoscape
computational-biology,dna2vec: Consistent vector representations of variable-length k-mers
User: pnpnpn
computational-biology,FABind: Fast and Accurate Protein-Ligand Binding (NeurIPS 2023)
User: qizhipei
Home Page: https://arxiv.org/abs/2310.06763
computational-biology,Fitness landscape exploration sandbox for biological sequence design.
User: samsinai
Home Page: https://flexs.readthedocs.io/en/latest/index.html
computational-biology,scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
Organization: scikit-bio
Home Page: https://scikit.bio
computational-biology,A high-performance, Pythonic language for bioinformatics
Organization: seq-lang
Home Page: https://seq-lang.org
computational-biology,INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
Organization: sorgerlab
Home Page: http://indra.bio
computational-biology,🧬 An R package for visualizing molecular data in 3D
User: swsoyee
Home Page: https://swsoyee.github.io/r3dmol/
computational-biology,Python library for reading, writing, and converting computational chemistry file formats and generating input files.
Organization: theochem
Home Page: https://iodata.readthedocs.io/en/latest/index.html
computational-biology,UCSC Genome Browser source tree. Stable branch: "beta".
Organization: ucscgenomebrowser
Home Page: http://genome.ucsc.edu/
computational-biology,Clustering scRNAseq by genotypes
User: wheaton5
computational-biology,A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction
Organization: yoseflab
Home Page: https://cassiopeia-lineage.readthedocs.io/en/latest/
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