Topic: neuroscience Goto Github

👇 Here are 1695 public repositories matching this topic...

alleninstitute / bmtk
neuroscience,Brain Modeling Toolkit
Organization: alleninstitute
Home Page: https://alleninstitute.github.io/bmtk/
neuroscience modeling simulation python neural-networks neuroinformatics neuron

analyticalmonk / awesome-neuroscience
neuroscience,A curated list of awesome neuroscience libraries, software and any content related to the domain.
User: analyticalmonk
Home Page: http://akashtandon.com/awesome-neuroscience/
neuroscience mooc brain awesome-list matlab python intelligence awesome list hacktoberfest

aramis-lab / clinica
neuroscience,Software platform for clinical neuroimaging studies
Organization: aramis-lab
Home Page: http://www.clinica.run/
ants bids-format brainweb freesurfer fsl machine-learning mrtrix3 neuroimaging neuroscience python scikit-learn spm

asoplata / open-computational-neuroscience-resources
neuroscience,A publicly-editable collection of open computational neuroscience resources
User: asoplata
neuroscience neuroscience-data neural-simulators neuroimaging-data electrophysiological-data neuroscience-methods computational-neuroscience computational-biology awesome awesome-list

bluebrain / bluepyopt
neuroscience,Blue Brain Python Optimisation Library
Organization: bluebrain
Home Page: https://bluepyopt.readthedocs.io/en/latest/
python optimisations neuroscience parameter modelling electrophysiology neurons computational-neuroscience cross-platform biological-simulations

bluebrain / brayns
neuroscience,Visualizer for large-scale and interactive ray-tracing of neurons
Organization: bluebrain
neurons visualisation ospray raytracing interactive embree neuroscience realtime-rendering large-scale volume-rendering

braindecode / braindecode
neuroscience,Deep learning software to decode EEG, ECG or MEG signals
Organization: braindecode
Home Page: https://braindecode.org/
deep-learning eeg electroencephalogram electroencephalography neuroimaging neuroscience python pytorch meg magnetoencephalography

brainflow-dev / brainflow
neuroscience,BrainFlow is a library intended to obtain, parse and analyze EEG, EMG, ECG and other kinds of data from biosensors
Organization: brainflow-dev
Home Page: https://brainflow.org/
eeg eeg-analysis brain-computer-interface brain-machine-interface brain-control bci signal-processing biosensors biosignals biosensor emg emg-signal ecg brainflow neuroscience python muse openbci

brainglobe / brainrender
neuroscience,a python based software for visualization of neuroanatomical and morphological data.
Organization: brainglobe
Home Page: https://brainglobe.info/documentation/brainrender/index.html
neuroscience python anatomy visualization

brainiak / brainiak
neuroscience,Brain Imaging Analysis Kit
Organization: brainiak
Home Page: http://brainiak.org
neuroscience fmri machine-learning distributed neuroimaging

brian-team / brian2
neuroscience,Brian is a free, open source simulator for spiking neural networks.
Organization: brian-team
Home Page: http://briansimulator.org
python neuroscience science differential-equations spiking-neural-networks biological-simulations code-generation simulation-framework brian computational-neuroscience

catmaid / catmaid
neuroscience,Collaborative Annotation Toolkit for Massive Amounts of Image Data
Organization: catmaid
Home Page: https://catmaid.org
connectomics neuroscience image-annotation network-analysis

csinva / csinva.github.io
neuroscience,Slides, paper notes, class notes, blog posts, and research on ML 📉, statistics 📊, and AI 🤖.
User: csinva
Home Page: https://csinva.io
notes slides blog machine-learning statistics artificial-intelligence jekyll-themes website research awesome

curiositry / eegrunt
neuroscience,A Collection Python EEG (+ ECG) Analysis Utilities for OpenBCI and Muse
User: curiositry
Home Page: http://autodidacts.io
eeg openbci ecg muse python data-visualization data-analysis neuroscience

emotiv / cortex-example
neuroscience,Example with Cortex V2/V3 API
Organization: emotiv
Home Page: https://emotiv.com
cortex epoc epocplus epocx insight eeg neuroscience

eselkin / awesome-computational-neuroscience
neuroscience,A list of schools and researchers in computational neuroscience
User: eselkin
awesome-list awesome computational-neuroscience neuroscience computational-biology computational computational-linguistics computational-psychology computational-psychiatry mathematical-neuroscience

etiennecmb / visbrain
neuroscience,A multi-purpose GPU-accelerated open-source suite for brain data visualization
User: etiennecmb
Home Page: http://visbrain.org
vispy gpu neuroscience visualization gui connectivity opengl mni brain sleep

fieldtrip / fieldtrip
neuroscience,The MATLAB toolbox for MEG, EEG and iEEG analysis
Organization: fieldtrip
Home Page: http://www.fieldtriptoolbox.org
meg eeg ecog analysis matlab dipole beamformer statistics time-frequency connectivity

fooof-tools / fooof
neuroscience,Parameterizing neural power spectra into periodic & aperiodic components.
Organization: fooof-tools
Home Page: https://fooof-tools.github.io/
electrophysiology oscillations power-spectral-density neuroscience local-field-potential eeg meg ecog lfp

janelia-flyem / dvid
neuroscience,Distributed, Versioned, Image-oriented Dataservice
Organization: janelia-flyem
Home Page: http://dvid.io
go dataservice image-storage http-service connectomics big-data neuroscience key-value versioning

jeshraghian / snntorch
neuroscience,Deep and online learning with spiking neural networks in Python
User: jeshraghian
Home Page: https://snntorch.readthedocs.io/en/latest/
pytorch spiking-neural-networks neuron-models python neural-networks machine-learning neuroscience snn spiking spike

kylemath / deepeeg
neuroscience,Deep Learning with Tensor Flow for EEG MNE Epoch Objects
User: kylemath
eeg machine-learning neuroscience deep-learning keras-tensorflow

lava-nc / lava
neuroscience,A Software Framework for Neuromorphic Computing
Organization: lava-nc
Home Page: https://lava-nc.org
deep-learning neural-networks neuromorphic neuromorphic-computing neuroscience python

mikeroyal / neuromorphic-computing-guide
neuroscience,Learn about the Neumorphic engineering process of creating large-scale integration (VLSI) systems containing electronic analog circuits to mimic neuro-biological architectures.
User: mikeroyal
neuromorphic-computing neuromorphic-hardware neuromorphic-engineering neuromorphic neural-networks neural-engine neural-engineering neural-network neuronal-network neural-machine-translation

mne-tools / mne-python
neuroscience,MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python
Organization: mne-tools
Home Page: https://mne.tools
python neuroscience electroencephalography magnetoencephalography electrocorticography machine-learning statistics visualization eeg meg

mouseland / kilosort
neuroscience,Fast spike sorting with drift correction for up to a thousand channels
Organization: mouseland
Home Page: https://kilosort.readthedocs.io/en/latest/
spike-sorting neuroscience electrophysiology

mouseland / suite2p
neuroscience,cell detection in calcium imaging recordings
Organization: mouseland
Home Page: http://www.suite2p.org
imaging neuroscience data-analysis

nengo / nengo
neuroscience,A Python library for creating and simulating large-scale brain models
Organization: nengo
Home Page: https://www.nengo.ai/nengo
nengo python neuroscience neural-networks

neuralensemble / elephant
neuroscience,Elephant is the Electrophysiology Analysis Toolkit
Organization: neuralensemble
Home Page: http://www.python-elephant.org
python data-analysis electrophysiology neurophysiology neuroscience statistics hacktoberfest

neurolib-dev / neurolib
neuroscience,Easy whole-brain modeling for computational neuroscientists 🧠💻👩🏿‍🔬
Organization: neurolib-dev
neuroscience neuroscience-methods computational-neuroscience mean-field-theory neural-networks brain-network brain-simulations brain-modeling

neuromatchacademy / course-content
neuroscience,NMA Computational Neuroscience course
Organization: neuromatchacademy
Home Page: https://compneuro.neuromatch.io
dynamic-systems machine-learning neuroscience stochastic-processes

neuronsimulator / nrn
neuroscience,NEURON Simulator
Organization: neuronsimulator
Home Page: http://nrn.readthedocs.io
neuron neuroscience high-performance-computing simulation

neuropsychology / neurokit.py
neuroscience,A Python Toolbox for Statistics and Neurophysiological Signal Processing (EEG, EDA, ECG, EMG...).
Organization: neuropsychology
Home Page: http://neurokit.rtfd.io
biosignals python eeg eda neuroscience microstates hrv rsa heart-rate ecg

neurotech-berkeley / neurotech-course
neuroscience,CS198-96: Intro to Neurotechnology @ UC Berkeley
Organization: neurotech-berkeley
eeg neurotech neuroscience neurofeedback event-related-potentials biosignals emg eeg-signals

neurotechx / moabb
neuroscience,Mother of All BCI Benchmarks
Organization: neurotechx
Home Page: https://neurotechx.github.io/moabb/
brain-computer-interface machine-learning eeg neuroscience bci bci-benchmarks

neurreps / awesome-neural-geometry
neuroscience,A curated collection of resources and research related to the geometry of representations in the brain, deep networks, and beyond
Organization: neurreps
Home Page: https://neurreps.org
deep-learning differential-geometry group-theory neural-computation neural-networks neuroscience papers awesome-list topology symmetry

open-cogsci / opensesame
neuroscience,Graphical experiment builder for the social sciences
Organization: open-cogsci
Home Page: http://osdoc.cogsci.nl/
psychology opensesame research neuroscience methods python social-sciences

psychopy / psychopy
neuroscience,For running psychology and neuroscience experiments
Organization: psychopy
Home Page: http://www.psychopy.org
science neuroscience experiment experimental-design experiment-control psychophysics psycholinguistics linguistics python psychopy

raphaelvallat / antropy
neuroscience,AntroPy: entropy and complexity of (EEG) time-series in Python
User: raphaelvallat
Home Page: https://raphaelvallat.com/antropy/
python signal-processing entropy fractal-dimension numba neuroscience eeg complexity signal feature-extraction

repronim / neurodocker
neuroscience,Generate custom Docker and Singularity images, and minimize existing containers
Organization: repronim
Home Page: https://www.repronim.org/neurodocker/
neuroscience docker nipype reproducible-research singularity-container science containers linux dockerfile apptainer

rordenlab / dcm2niix
neuroscience,dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
Organization: rordenlab
Home Page: https://www.nitrc.org/plugins/mwiki/index.php/dcm2nii:MainPage
dicom nifti mri mri-images research neuroscience neuroimaging jpeg-image jpeg dicom-images

seung-lab / euclidean-distance-transform-3d
neuroscience,Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.
Organization: seung-lab
cpp python distance-transform euclidean-distance 3d 2d 1d connectomics neuroscience algorithm biomedical-image-processing numpy anisotropy anisotropic parallel euclidean-distance-transform marching-parabolas signed-distance-field signed-distance-functions

simetenn / uncertainpy
neuroscience,Uncertainpy: a Python toolbox for uncertainty quantification and sensitivity analysis, tailored towards computational neuroscience.
User: simetenn
Home Page: http://uncertainpy.readthedocs.io
uncertainty-quantification sensitivity-analysis neuroscience python computational-modeling

simonarvin / eyeloop
neuroscience,EyeLoop is a Python 3-based eye-tracker tailored specifically to dynamic, closed-loop experiments on consumer-grade hardware.
User: simonarvin
neuroscience eye-tracking senses video-oculography neurology psychology visual

spikeinterface / spikeinterface
neuroscience,A Python-based module for creating flexible and robust spike sorting pipelines.
Organization: spikeinterface
Home Page: https://spikeinterface.readthedocs.io
spike-sorting neuroscience electrophysiology

translationalneuromodeling / tapas
neuroscience,TAPAS - Translational Algorithms for Psychiatry-Advancing Science
Organization: translationalneuromodeling
Home Page: https://translationalneuromodeling.github.io/tapas/
computational psychiatry behavioral neuroscience psychosomatics neurology statistical-learning bayesian-inference hierarchical-models fmri

ucdavis / erplab
neuroscience,ERPLAB Toolbox is a free, open-source Matlab package for analyzing ERP data. It is tightly integrated with EEGLAB Toolbox, extending EEGLAB’s capabilities to provide robust, industrial-strength tools for ERP processing, visualization, and analysis. A graphical user interface makes it easy for beginners to learn, and Matlab scripting provides enormous power for intermediate and advanced users.
Organization: ucdavis
Home Page: http://erpinfo.org/erplab
eeglab erp eeg-data csd erp-data matlab eeglab-toolbox erplab event-related-potentials electroencephalography

washington-university / workbench
neuroscience,Connectome Workbench
Organization: washington-university
Home Page: http://www.humanconnectome.org/software/get-connectome-workbench.html
c-plus-plus neuroscience mri cifti nifti gifti

wmayner / pyphi
neuroscience,A toolbox for integrated information theory.
User: wmayner
Home Page: https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006343
causality information neuroscience integrated-information modeling causation

yttrilab / b-soid
neuroscience,Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is a pipeline that pairs unsupervised pattern recognition with supervised classification to achieve fast predictions of behaviors that are not predefined by users.
User: yttrilab
deeplabcut unsupervised-learning-algorithm behavior-analysis dimensionality-reduction neuroscience discover-behaviors umap-hdbscan openpose sleap