Topic: connectomics Goto Github
Some thing interesting about connectomics
Some thing interesting about connectomics
connectomics,Flood Fill Network for 3d Electron Microscopy volume neuron segmentation. Adapt from google FFN-master add notes and custom variation and parallelization (for windows and our retina & LGN data)
User: animadversio
connectomics,A performant, powerful query framework to search for network motifs
Organization: aplbrain
Home Page: https://bossdb.org/tools/dotmotif
connectomics,Performant, pure-Python subgraph isomorphism and monomorphism search (aka "motif search")
Organization: aplbrain
connectomics,Flood filling networks for segmenting electron microscopy of neural tissue
User: aschampion
connectomics,Predicting multigraph brain population from a single graph
User: basiralab
connectomics,BIDS app for NeuroData's MRI to Graphs pipeline
Organization: bids-apps
Home Page: http://m2g.io
connectomics,OG 2019 - Project 09: Visualizing brain connectomics using D3.js
Organization: brainhack-ch
connectomics,BRAPH 2.0 is a comprehensive software package for the analysis and visualization of brain connectivity data, offering flexible customization, rich visualization capabilities, and a platform for collaboration in neuroscience research.
Organization: braph-software
Home Page: http://braph.org
connectomics,Collaborative Annotation Toolkit for Massive Amounts of Image Data
Organization: catmaid
Home Page: https://catmaid.org
connectomics,Python client for the CATMAID API
Organization: catmaid
connectomics,This is te python client for accessing REST APIs within the Connectome Annotation Versioning Engine.
Organization: caveconnectome
Home Page: https://caveconnectome.github.io/CAVEclient/
connectomics,Resources for the EuroVis 2022 survey paper on Visualization and Analysis in High-Resolutiuon Connectomics
User: connectomics-vis-survey
Home Page: https://connectomics-vis-survey.github.io/
connectomics,Distributed segmentation for bio-image-analysis
User: constantinpape
connectomics,Graph theory analysis of brain MRI data
User: cwatson
connectomics,Analysis code for connecting time-series properties of BOLD dynamics to connectivity properties using human fMRI and DWI data from HCP
Organization: dynamicsandneuralsystems
connectomics,Scalable Optical Flow-based Image Montaging and Alignment
Organization: google-research
connectomics,Flood-Filling Networks for instance segmentation in 3d volumes.
Organization: google
connectomics,
Organization: ilastik
connectomics,Open source volume electron microscopy (vEM) datasets for connectomics.
User: jackiezhai
connectomics,interactive search and analysis for neuronal motifs
User: jakobtroidl
Home Page: https://vimo-client-3jagpvnfya-uc.a.run.app
connectomics,Distributed, Versioned, Image-oriented Dataservice
Organization: janelia-flyem
Home Page: http://dvid.io
connectomics,Janelia Workstation
Organization: janeliascicomp
connectomics,KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural morphology and connectivity.
Organization: knossos-project
Home Page: https://knossos.app
connectomics,Code for MICCAI 2017 paper
User: lodurality
connectomics,Research code and results for the paper "Simulation-based inference for computational connectomics" (Boelts et al. 2023 PLoS CB, @janfb)
Organization: mackelab
connectomics,Metric learning and contrastive learning for neuron segmentation
User: markschoene
connectomics,The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macroscale brain organization. 🤠
Organization: mica-mni
Home Page: https://enigma-toolbox.readthedocs.io
connectomics,Open Scripts and pipelines from the Multimodal Imaging and Connectome Analysis Lab at the Montreal Neurological Institute
Organization: mica-mni
Home Page: http://mica-mni.github.io
connectomics,Support functions for analysis of FAFB EM segmentation
Organization: natverse
Home Page: https://natverse.org/fafbseg/
connectomics,R client utilities for interacting with the neuPrint connectome analysis service
Organization: natverse
Home Page: http://natverse.org/neuprintr
connectomics,Extraction of 3D skeletons from meshes.
Organization: navis-org
Home Page: https://navis-org.github.io/skeletor/
connectomics,Reproducible code for "Multiscale Comparative Connectomics"
Organization: neurodata
Home Page: https://arxiv.org/abs/2011.14990
connectomics,Preprocessing and reconstruction of diffusion MRI
Organization: pennlinc
Home Page: http://qsiprep.readthedocs.io
connectomics,We provide a method to extract the tractographic features from structural MR images for patients with brain tumor
User: pykao
connectomics,FOD-Net: A Deep Learning Method for Fiber Orientation Distribution Angular Super Resolution
User: ruizengalways
connectomics,Matlab toolbox for connectomics analysis and rendering
User: sarastokes
connectomics,Visualize, share and annotate your large 3D images online
Organization: scalableminds
Home Page: https://webknossos.org
connectomics,Read and write Neuroglancer datasets programmatically.
Organization: seung-lab
Home Page: https://twitter.com/thundercloudvol
connectomics,Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.
Organization: seung-lab
connectomics,Cython bindings for fpzip, a floating point image compression algorithm.
Organization: seung-lab
connectomics,Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
Organization: seung-lab
connectomics,Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
Organization: seung-lab
connectomics,Marching Cubes & Mesh Simplification on multi-label 3D images.
Organization: seung-lab
connectomics,Brainconn - an R package for visualising brain connectivity data in 2D and interactive 3D
User: sidchop
Home Page: https://sidchop.github.io/brainconn/articles/brainconn.html
connectomics,Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
Organization: structuralneurobiologylab
Home Page: http://structuralneurobiologylab.github.io/SyConn/
connectomics,A unified environment for DNN-based automated segmentation of neuronal EM images
User: urakubo
connectomics,Compresso: Efficient Compression of Segmentation Data For Connectomics
Organization: vcg
connectomics,Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data
User: yuelongwu
connectomics,PyTorch Connectomics: segmentation toolbox for EM connectomics
User: zudi-lin
Home Page: http://connectomics.readthedocs.io/
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