Topic: scrnaseq Goto Github
Some thing interesting about scrnaseq
Some thing interesting about scrnaseq
scrnaseq,A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and covariation patterns between interacted cell types.
User: ankitbioinfo
Home Page: https://pypi.org/project/nico-sc-sp/
scrnaseq,Reliable, scalable, efficient demultiplexing for single-cell RNA sequencing
User: arogozhnikov
scrnaseq,An R package to robustly identify subpopulations in single-cell RNASeq data.
User: asmagen
scrnaseq,Robust single cell clustering and comparison of population compositions across tissues and experimental models via similarity analysis.
User: asmagen
Home Page: http://dx.doi.org/10.1016/j.celrep.2019.10.131
scrnaseq,Preprocessing of UMI-based scRNA-seq supporting spliced/unspliced count generation and feature barcoding experiments with alevin
User: atpoint
scrnaseq,Explore and share your scRNAseq clustering results
Organization: baderlab
Home Page: https://baderlab.github.io/scClustViz/
scrnaseq,Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq
Organization: bodegalab
scrnaseq,Ligand-Receptor Analysis for scRNAseq data
User: chiblyaa
scrnaseq,Taller de la CDSB 2021 sobre análisis de datos de scRNA-seq con Bioconductor
Organization: comunidadbioinfo
Home Page: https://comunidadbioinfo.github.io/cdsb2021_scRNAseq/
scrnaseq,Este es el material del mini curso "Exploración interactiva de datos: plotly y iSEE" ofrecido por la Red Mexicana de Bioinformática y la Comunidad de Desarrolladores de Software en Bioinformática.
Organization: comunidadbioinfo
Home Page: https://comunidadbioinfo.github.io/minicurso_mayo_2021/
scrnaseq,Single Cell Cluster Evaluation
User: crazyhottommy
scrnaseq,This repository stores the scigenex R library.
User: dputhier
scrnaseq,This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
User: dragonmasterx87
scrnaseq,Hello there! Some code on how to merge >2 Seurat objects and maintain object identity :)
User: dragonmasterx87
scrnaseq,Tools and functions for conducting scRNASeq in my pipelines
User: eisascience
scrnaseq,
Organization: elolab
Home Page: https://elolab.github.io/Totem-protocol
scrnaseq,Cell type pipes for R
User: felixthestudent
scrnaseq,
User: fentouxungui
scrnaseq,Single Cell Journalling
User: gravitogen
scrnaseq,Discovers nested gene co-expressing modules
User: hansolo-bioinfo
scrnaseq,scripts for scRNA-Seq/scATAC-Seq
User: hattyoriiiiiii
scrnaseq,scRNAseq analysis for STAT4 variants
User: hmbaghdassarian
scrnaseq,R package - Analysis of Single Cell Expression, Normalisation and Differential expression (ascend)
Organization: imb-computational-genomics-lab
scrnaseq,The Hitchhiker's Guide to scRNA-seq - 2024
User: imm-workshops
scrnaseq,Package demo for scRNAseqApp
User: jianhong
Home Page: https://jianhong.github.io/scRNAseqAppBioc2023Workshop/
scrnaseq,Automated scRNAseq analysis package
User: jiaxuanyang1204
scrnaseq,adtseq provides simple Rcpp methods to identify Antibody-Derived-Tags in single cell CITE/REAP-seq data
User: julianspagnuolo
scrnaseq,A data structure for single cell sequencing data analysis in Julia.
Organization: juliasinglecellomics
Home Page: https://juliasinglecellomics.github.io/OmicsProfiles.jl/stable/
scrnaseq,A single-cell RNA sequencing data analysis toolkit in Julia.
Organization: juliasinglecellomics
Home Page: https://juliasinglecellomics.github.io/SnowyOwl.jl/stable
scrnaseq,Course for LCG-UNAM at LIIGH-UNAM for March 2020 based on the book "Orchestrating Single Cell Analysis with Bioconductor" and WEHI's scRNA-seq course
User: lcolladotor
Home Page: https://lcolladotor.github.io/osca_LIIGH_UNAM_2020/
scrnaseq,a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
User: louisfaure
Home Page: https://scfates.readthedocs.io/
scrnaseq,Integration analysis with Scanpy and scRNAseq TME from blueprint
User: luglilab
scrnaseq,R Package for Single Cell RNAseq Synthetic Data Simulation
Organization: marchinilab
scrnaseq,Plot_ly-based plotting functions for use with Seurat objects
User: milescsmith
scrnaseq,
User: munizmom
scrnaseq,R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-cell analytic work flows.
User: nmikolajewicz
scrnaseq,R Package for interrogating clonal data
Organization: phipsonlab
Home Page: https://phipsonlab.github.io/CloneDetective/
scrnaseq,Nextflow pipeline for extracting and counting clonal barcodes
Organization: phipsonlab
Home Page: https://phipsonlab.github.io/NextClone/
scrnaseq,Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles.
User: qile0317
Home Page: https://qile0317.github.io/APackOfTheClones/
scrnaseq,Single-Cell Data Science
User: rahulbhadani
scrnaseq,An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
Organization: theislab
scrnaseq,Differential expression and allelic analysis, nonparametric statistics
Organization: thelovelab
Home Page: https://thelovelab.github.io/fishpond
scrnaseq,Scripts used in scRNAseq and scCUTnTag data processing and analyses in 2023 Tenney et al Nature Genetics HCFP paper
User: waiman-chan
scrnaseq,Clustering scRNAseq by genotypes
User: wheaton5
scrnaseq,Method to detect 3'UTR changes from scRNA-seq
Organization: zavolanlab
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