Topic: protein-design Goto Github
Some thing interesting about protein-design
Some thing interesting about protein-design
protein-design,Protein Graph Library
User: a-r-j
Home Page: https://graphein.ai/
protein-design,Versatile computational pipeline for processing protein structure data for deep learning applications.
Organization: adaptyvbio
Home Page: https://adaptyvbio.github.io/ProteinFlow/
protein-design,Learning to design protein-protein interactions with enhanced generalization (ICLR24)
User: anton-bushuiev
Home Page: https://arxiv.org/abs/2310.18515
protein-design,De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds
Organization: aqlaboratory
protein-design,Multimodal encoder-only transformer model for image-based protein predictions
Organization: bohuanglab
Home Page: https://bohuanglab.github.io/CELL-E_2/
protein-design,
User: chao1224
Home Page: https://chao1224.github.io/ProteinDT
protein-design,Deep learning for protein science
User: conradry
protein-design,Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/content/10.1101/2020.11.29.402743v1.abstract
User: dtischer
protein-design,This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)
User: edapinenut
protein-design,The first large protein language model trained follows structure instructions.
User: eikor
protein-design,Official repository for discrete Walk-Jump Sampling (dWJS)
Organization: genentech
Home Page: https://arxiv.org/abs/2306.12360
protein-design,SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.
Organization: google-research
protein-design,Protein Design by Machine Learning guided Directed Evolution
Organization: hysonlab
Home Page: https://www.biorxiv.org/content/10.1101/2023.11.28.568945v1
protein-design,Complex-based Ligand-Binding Proteins Redesign by Equivariant Diffusion-based Generative Models
Organization: hysonlab
Home Page: https://www.biorxiv.org/content/10.1101/2024.04.17.589997v2.full.pdf
protein-design,A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
Organization: j-snackkb
protein-design,Python Toolbox For Rosetta Silent Files Processing
User: jaumebonet
Home Page: http://jaumebonet.cat/RosettaSilentToolbox
protein-design,A curated list of awesome protein design research, software and resources.
User: johnnytam100
protein-design,Implementation of the model from "ProGen: Language Modeling for Protein Generation"
User: kyegomez
Home Page: https://discord.gg/qUtxnK2NMf
protein-design,Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Organization: lightdock
Home Page: https://lightdock.org/
protein-design,Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Organization: lightdock
Home Page: https://lightdock.org/
protein-design,RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Marks Lab at Harvard.
Organization: lightonai
protein-design,MaSIF-neosurf: surface-based protein design for ternary complexes.
Organization: lpdi-epfl
protein-design,Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch
User: lucidrains
protein-design,Implementation of Denoising Diffusion for protein design, but using the new Equiformer (successor to SE3 Transformers) with some additional improvements
User: lucidrains
protein-design,Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design
User: lucidrains
protein-design,Benchmarking uncertainty quantification methods on proteins.
Organization: microsoft
protein-design,Design platform for creating single-chain polyhedral cages made from coiled-coil building modules
Organization: nic-sbi
protein-design,Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
Organization: oatml-markslab
protein-design,Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.
User: ostrokach
Home Page: http://proteinsolver.org
protein-design,Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集
Organization: paddlepaddle
protein-design,List of papers about Proteins Design using Deep Learning
User: peldom
protein-design,Benchmark for Biophysical Sequence Optimization Algorithms
Organization: prescient-design
protein-design,Official repository for discrete Walk-Jump Sampling (dWJS)
Organization: prescient-design
Home Page: https://prescient-design.github.io/walk-jump/
protein-design,Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
Organization: rosettacommons
Home Page: https://rosettacommons.github.io/PyRosetta.notebooks/
protein-design,The Rosetta Bio-macromolecule modeling package.
Organization: rosettacommons
Home Page: https://www.rosettacommons.org
protein-design,Fitness landscape exploration sandbox for biological sequence design.
User: samsinai
Home Page: https://flexs.readthedocs.io/en/latest/index.html
protein-design,Code to reproduce experiments in "Accelerating Bayesian Optimization for Protein Design with Denoising Autoencoders" (Stanton et al 2022)
User: samuelstanton
protein-design,A bare metal Python library for building and manipulating protein molecular structures
User: sarisabban
protein-design,Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure
User: sarisabban
protein-design,RosettaDesign using PyRosetta
User: sarisabban
protein-design,Guided Conditional Wasserstein GAN for De Novo Protein Design
User: shen-lab
Home Page: https://doi.org/10.1021/acs.jcim.0c00593
protein-design,Geometric deep learning of protein–DNA binding specificity
User: timkartar
protein-design,A Motif-Based PPI Searching Pipeline for PPI Mining and Protein Design
User: wang-lin-boop
protein-design,DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
Organization: wells-wood-research
Home Page: http://destressprotein.design
protein-design,PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.
Organization: wells-wood-research
protein-design,Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis
Organization: wells-wood-research
protein-design,SaprotHub: Making Protein Modeling Accessible to All Biologists
Organization: westlake-repl
protein-design,Rotamer Interaction Field Python Libraries for Computational Protein Design
User: willsheffler
Home Page: https://rif.readthedocs.io
protein-design,Deep Critical Learning. Implementation of ProSelfLC, IMAE, DM, etc.
User: xinshaoamoswang
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