Topic: crispr-cas9 Goto Github
Some thing interesting about crispr-cas9
Some thing interesting about crispr-cas9
crispr-cas9,Polymorphic Edge Detection - An efficient polymorphism detector for NGS data
User: akiomiyao
crispr-cas9,MinTEs is a computational framework that aims at finding optimised reference templates given user-specified parameters (i.e. CRISPR-Cas9 library, reference gene templates, percentage of subsampling).
User: alevin1995
crispr-cas9,SPROUT is a machine learning tool to predict the DNA repair outcome in CRISPR experiments.
User: amirmohan
crispr-cas9,Flexible analysis of high-content CRISPR screening
Organization: arcinstitute
Home Page: https://screenpro2.rtfd.io
crispr-cas9,Commands, scripts, and data for reanalysis of "Unexpected mutations after CRISPR–Cas9 editing in vivo"
Organization: aryeelab
Home Page: https://aryeelab.org/crispr_mutation_reanalysis
crispr-cas9,NGS data analysis scripts for HBV elimination research group
User: babinyurii
crispr-cas9,A workflow to analyse sequence mutations in CRISPR-CAS9 targeted amplicon sequencing data
Organization: bimsbbioinfo
crispr-cas9,Genotyping MUltiplexed-Sequencing of CRISPR-Localized Editing
User: casanova-lab
crispr-cas9,This tool is designed to scan all positions on a gene than can be used to specifically cut one DNA strand using a given cas9.
User: clbenoit
crispr-cas9,Base functions and classes for CRISPR gRNA design
Organization: crisprverse
crispr-cas9,Bowtie-based alignment of CRISPR gRNA spacer sequences
Organization: crisprverse
crispr-cas9,BWA-based alignment of CRISPR gRNA spacer sequences
Organization: crisprverse
crispr-cas9,Comprehensive design of CRISPR gRNAs for nucleases and base editors
Organization: crisprverse
crispr-cas9,Useful human and mouse data for the crisprVerse ecosystem
Organization: crisprverse
crispr-cas9,On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs
Organization: crisprverse
crispr-cas9,Automatically create CRISPR guides for DASH :scissors:
Organization: czbiohub-sf
Home Page: http://dashit.czbiohub.org
crispr-cas9,List of software/websites/databases/other stuff for genome engineering
User: davidliwei
crispr-cas9,DeepGuide: a tool to predict CRIPR activity
User: ddipankar
crispr-cas9,Analysis package for processing counts from genome-wide CRISPR/Cas9 screens
User: felicityallen
crispr-cas9,Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products
Organization: gear-genomics
Home Page: https://www.gear-genomics.com/indigo/
crispr-cas9,Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files
Organization: gear-genomics
Home Page: https://www.gear-genomics.com/
crispr-cas9,[This is an archived repository, see the current version in Arc Institute GitHub]
Organization: gilbertlabucsf
Home Page: https://github.com/ArcInstitute/ScreenPro2
crispr-cas9,CB2 is an R package which provides functions for hit gene identification and quantification of sgRNA (single-guided RNA) abundances for CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) pooled screen data analysis. Details are in Jeong et al. (2019) <doi:10.1101/gr.245571.118> and Baggerly et al. (2003) <doi:10.1093/bioinformatics/btg173>.
User: hyunhwan-jeong
Home Page: https://cran.r-project.org/web/packages/CB2/index.html
crispr-cas9,Core code for the DeepHF prediction tool
User: izhangcd
Home Page: http://www.deephf.com
crispr-cas9,A reference-free statistical approach to diversity-generating & mobile genetic element discovery
User: jordiabante
crispr-cas9,Modelling insertion efficiency for Prime Insertion Experiments
User: julianeweller
crispr-cas9,A software tool for personalized and allele-specific CRISPR editing.
User: keoughkath
Home Page: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1783-3
crispr-cas9,Repository contains information on the mass spectrometry data in TMEM41B and VMP1 KO cells
User: kuanrongchan
crispr-cas9,InDels analysis of CRISPR lines by NGS amplicon sequencing technology for a multicopy gene family.
User: labfbarro
crispr-cas9,Biotechnology project about possible side effects and consequences of CRISPR
User: loopglitch26
crispr-cas9,Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
User: lucapinello
crispr-cas9,R markdown notebooks for analysis of CRISPR inhibition library data
User: m-jahn
crispr-cas9,FlashFry: The rapid CRISPR target site characterization tool
Organization: mckennalab
crispr-cas9,A multi-source ensemble predictor for prioritizing sgRNAs in CRISPR/Cas9 protein knockouts
User: mdhewei
crispr-cas9,Pip package for CRISPR-Cas9 screen analysis
User: niekwit
crispr-cas9,convert MAGeCK to python3
User: onlybelter
Home Page: http://liulab.dfci.harvard.edu/Mageck/
crispr-cas9,A tool for designing sgRNAs and repair templates for CRISPR experiments
User: orpowell
crispr-cas9,CRISPR sgRNA design for the Genetic Perturbation Platform at the Broad Institute
User: peterdeweirdt
Home Page: https://portals.broadinstitute.org/gpp/public/
crispr-cas9,Python and R pipeline to predict sgRNA efficiency in D.mel via machine learning algorithms trained and optimized on CRIPSR pooled gene essentiality screens
User: pierremkt
crispr-cas9,A gRNA database generation tool.
Organization: pritykinlab
Home Page: http://www.guidescan.com
crispr-cas9,CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
User: russel88
Home Page: https://typer.crispr.dk
crispr-cas9,A guideRNA design tool for the modern era.
User: schmidt73
Home Page: https://guidescan.com
crispr-cas9,CRISPR Guide RNA Designer
User: subglitch1
crispr-cas9,A program used to find indels on target gene edited by CRISPR/Cas9
User: tuanjienew
crispr-cas9,Prime editing guide RNA prediction
Organization: uzh-dqbm-cmi
Home Page: https://pridict.it/
crispr-cas9,Protein language models-assisted optimization of a uracil-N-glycosylase variant enables programmable T-to-G and T-to-C base editing
Organization: westlake-repl
crispr-cas9,A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction
Organization: yoseflab
Home Page: https://cassiopeia-lineage.readthedocs.io/en/latest/
crispr-cas9,Analyze CRISPR and shRNA functional genetic screening data
Organization: zuberlab
crispr-cas9,Process CRISPR and shRNA functional genetic screening data
Organization: zuberlab
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