Topic: sra Goto Github
Some thing interesting about sra
Some thing interesting about sra
sra,Predicting missing metadata with recurrent neural network (RNNs) based entity extraction
User: adamklie
sra,Collect NIH NCBI SRA metadata of several GEO studies in one search
User: arcones
Home Page: https://arcones.github.io/sra-collector/
sra,A Guide to Automatically Downloading NCBI SRA Reads
User: asadprodhan
sra,A pipeline for running rsem analysis on thousands of samples
Organization: bcgsc
sra,Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
Organization: cdcgov
Home Page: https://cdcgov.github.io/seqsender/
sra,
Organization: cyverseuk
sra,Bioinformatics analysis of SARS-CoV-2
User: davetang
Home Page: https://davetang.org/muse/2020/03/05/sequence-analysis-sars-cov-2/
sra,MetaQuest is a robust and user-friendly command-line toolkit designed to simplify and streamline the analysis of metagenomic data. From summarizing the presence of specific genomes to visualizing complex datasets, MetaQuest offers an array of tools to help researchers uncover insights from their metagenomic datasets.
Organization: foi-bioinformatics
sra,Automated mitochondrial genome assembly using SRA public data
User: gavieira
sra,Code for systematically classify data in SRA according to all the taxa present in the reads (SRA-metagenome)
Organization: genomeud
sra,read data generator
User: hunglin59638
sra,Automatic NGS data analysis from SRA download to the quantification of RNAs.
User: imamachi-n
sra,Poster for Biology of Genomes 2019 (#bog19) on recount-brain
User: lcolladotor
Home Page: https://lcolladotor.github.io/recount-brain-bog19/
sra,PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied annotations of the data sets can not be trusted, and so PARTIE allows automatic separation of the data.
User: linsalrob
sra,Tools, tricks, tips, and uses for SRA in the cloud
User: linsalrob
sra,A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
User: louiejtaylor
sra,Simple Private Set Intersection implemented in pure Go.
User: lucasmenendez
sra,Sequence Read Archive Classification
User: majid-soheili
sra,Proof of concept of a SRA to trimmed FASTQ (including quality control) pipeline with Nextflow
User: maxgreil
sra,Find structured-datasets from within the Sequence Read Archive
User: mbernste
sra,Implement a non-server dependent coin flipper client as part of a IT-Security project in university.
User: mervyn-mccreight
sra,Sequencing data preprocessing
User: metamaden
sra,Up-to-date SRA growth size visualization
User: mr-eyes
Home Page: http://www.mr-eyes.com/sra_size_plot/
sra,Work on and around an interactive metadata table for project identification
Organization: ncbi-hackathons
sra,A pipeline for viral identification from metagenomic samples
Organization: ncbi-hackathons
sra,Interactive R package to quantify, analyse and visualise alternative splicing
User: nuno-agostinho
Home Page: http://nuno-agostinho.github.io/psichomics/
sra,🪛 Fetch ncbi metadata for sra and assemblies
Organization: pathogenomics-lab
sra,Builds a PEP from SRA or GEO accessions
Organization: pepkit
Home Page: https://pep.databio.org/geofetch/
sra,Tool for indexing and querying back-splice junctions of circular RNAs (circRNAs) in RNA-Seq datasets
User: pmenzel
sra,Python wrapper created to help download metagenomic data from SRA or ENA databases
Organization: quantori
sra,Download fastqs or supplementary files from GEO and upload to hca-util bucket
User: rachadele
sra,Pipeline for RNA-seq analysis
User: rohitsuratekar
sra,Package for fetching metadata and downloading data from SRA/ENA/GEO
User: saketkc
Home Page: https://saketkc.github.io/pysradb
sra,Access and Format Single-cell RNA-seq Datasets from Public Resources
User: showteeth
Home Page: https://showteeth.github.io/scfetch/
sra,GEO RNA-seq Experiments Processing Pipeline
Organization: uc-bd2k
Home Page: https://cran.r-project.org/web/packages/GREP2/index.html
sra,A demo workflow showing download, extraction, and compression of sequences from SRA.
Organization: unseenbio
sra,Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
Organization: vanheeringen-lab
Home Page: https://vanheeringen-lab.github.io/seq2science
sra,R functions for querying Sean Davis' omicidx system
User: vjcitn
Home Page: https://vjcitn.github.io/omicidxClient
sra,(Archived) This page is a record of my first formal NGS Project for Dr. Matesic of University of South Carolina (USC).
User: volcanix280
sra,Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
User: wwood
Home Page: https://wwood.github.io/kingfisher-download
sra,Independent project I undertook to perform a full ChIP-Seq analysis of the transcription factor Nanog in Zebrafish embryos.
User: yogionbioinformatics
sra,An SRA library through which web assembly is provided as an interface to generate SRA public and private keys client side
Organization: zkcohort
Home Page: https://crates.io/crates/sra-wasm
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