Topic: bam-files Goto Github
Some thing interesting about bam-files
Some thing interesting about bam-files
bam-files,FLiCK - Format LeveragIng Compression frameworK
User: aaiezza
bam-files,Filter alignments on sequence length and/or identity of first nucleotide.
User: adomingues
bam-files,Utilities for analyzing next generation sequencing data.
Organization: angsd-wrapper
bam-files,Hilbert Mapper is a C++ implementation of Hilbert's space filling curve to represent read coverage on genomic sequences. Although it can be used to represent any unidimensional vector of positive numerical data.
User: antoineho
bam-files,Various scripts for working with NGS data in file formats such as VCF, BAM/SAM, and JSON
User: aobermayer4
bam-files,Utility to check Binary Sequence Alignment / Map (BAM) files for corruption and repair them
User: arkanosis
Home Page: https://bamrescue.arkanosis.net/
bam-files,Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point for more complex scripts
Organization: biodata-fun
bam-files,Sequence alignment tools
Organization: biojulia
bam-files,Datastores for reads, not your papa's FASTQ files.
Organization: biojulia
bam-files,Parse and process SAM and BAM formatted files
Organization: biojulia
bam-files,Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
User: chgibb
Home Page: https://chgibb.github.io/PHATDocs
bam-files,Learning the Sequence Alignment/Map format
User: davetang
Home Page: https://davetang.github.io/learning_bam_file/
bam-files,The DKFZ alignment workflow plugin originally developed at the eilslabs
Organization: dkfz-odcf
Home Page: https://github.com/DKFZ-ODCF/AlignmentAndQCWorkflows/wiki
bam-files,Nextflow-based BAM-to-FASTQ conversion and FASTQ-sorting workflow.
Organization: dkfz-odcf
bam-files,Genomic data manipulation tool
Organization: doublehelixapp
Home Page: https://doublehelix.app
bam-files,Splice junction analysis and filtering from BAM files
Organization: ei-corebioinformatics
Home Page: https://ei-corebioinformatics.github.io/portcullis/
bam-files,A comprehensive quality check tool for BAM file produced in NGS workflow.
User: eldermedic
bam-files,Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last module of the project allows you to use clusterprofiler in order to perform ORA and GSEA analysis (over-representation analysis and gene set enrichment analysis) using GeneOntology (GO), disease ontology (DO), KEGG, reactome eg...
User: francescopatane96
bam-files,A Python3 script to quickly spot check 10 random sequences from a BAM/FASTx file.
User: harper357
bam-files,Apply samtools addreplacerg to add a new read group and assign all reads to it in a BAM file
Organization: iarcbioinfo
bam-files,Pipeline for copy number variant calling from Whole Exome sequencing data using CODEX
Organization: iarcbioinfo
bam-files,Multi-sample somatic variant caller
Organization: iarcbioinfo
bam-files,https://ioncram.saudigenomeproject.com/
Organization: ioncram
bam-files,create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
User: jonas-fuchs
bam-files,A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)
User: jslfree080
bam-files,Genome browser and variant annotation
User: kcleal
bam-files,Split a BAM file by haplotype support
Organization: luntergroup
bam-files,Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.
User: mnievesc
bam-files,Udo Stenzel's biohazard-tools — a collection of command-line utilities for bioinformatics [MIRROR]
Organization: mpieva
Home Page: https://bitbucket.org/ustenzel/biohazard-tools
bam-files,Udo Stenzel's perl-ngs — a collection of Perl tools for next-generation sequencing [MIRROR]
Organization: mpieva
Home Page: https://bitbucket.org/ustenzel/perl-ngs
bam-files,AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
User: nsalomonis
Home Page: http://www.altanalyze.org
bam-files,Go / Golang Bioinformatics Library
User: pbenner
bam-files,Visualize your BAM alignments with Circos
User: pcantalupo
bam-files,knowledge-based genotyping of cancer hotspots from the tumor BAM files
User: poisonalien
bam-files,SAMtools and BCFtools (v1.10) for manipulating next-generation sequencing data, from bioconda
User: sghignone
bam-files,:vertical_traffic_light: Run Picard on BAM files and collate 90 metrics into one file.
User: slowkow
Home Page: https://slowkow.github.io/picardmetrics
bam-files,:card_index: Retrieve data in genomic intervals with a Python interface for tabix.
User: slowkow
bam-files,⛰ covtobed | Convert the coverage track from a BAM file into a BED file
User: telatin
bam-files,This Roddy plugin contains a basic bam to fastq workflow using Picard and Samtools.
Organization: theroddywms
bam-files,vSNP -- validate SNPs
Organization: usda-vs
bam-files,vSNP -- validate SNPs
Organization: usda-vs
bam-files,script to convert bam2cram and reverse using find and samtools
User: vidboda
bam-files,A python package storing different tools for different NGS operations
User: wckdouglas
Home Page: https://sequencing-tools.readthedocs.io/en/latest/
bam-files,Process Illumina instrument data into SAM/BAM/CRAM files.
Organization: wtsi-npg
Home Page: http://wtsi-npg.github.io/bambi
bam-files,fxtools: light-weight processing tool for FASTA/FASTQ/BAM format data
User: yangao07
bam-files,Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data
User: zhpn1024
Home Page: http://dx.doi.org/10.1038/s41467-017-01981-8
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