Topic: omics Goto Github
Some thing interesting about omics
Some thing interesting about omics
omics,Open-Source Software for Omic Data Analysis and Visualization
Organization: abbvie-external
omics,DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further investigation and experimental validation. The novelty of DecontaMiner is mainly represented by its easy integration with the standard procedures of NGS data analysis, while providing a complete, reliable, and automatic pipeline. https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2684-x
User: amarinderthind
Home Page: http://www-labgtp.na.icar.cnr.it/decontaminer/
omics,Comparative Metatranscriptomics Workflow
User: anwarmz
omics,This project contains the webapp sample integrated with Amazon Omics, which allows users such as admin and bioinformaticians to operate Amazon Omics workflow easily and check the run command status with charts and tables.
Organization: aws-samples
omics,Visual self-service analytics platform for big omics data.
Organization: bigomics
Home Page: http://www.bigomics.ch
omics,The deconvR is an R package designed for analyzing deconvolution of the bulk sample(s) using an atlas of reference omic signature profiles and a user-selected model.
Organization: bimsbbioinfo
omics,compositional data analysis toolbox
Organization: biocore
Home Page: https://biocore.github.io/gneiss/
omics,An python omics data toolkit for the analysis across biological scales
Organization: biomedsciai
omics,Python framework for explainable omics analysis
User: breimanntools
Home Page: https://xomics.readthedocs.io
omics,Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
User: cafferychen777
Home Page: https://www.microbiomestat.wiki/
omics,CRAN Task View: Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics
Organization: cran-task-views
Home Page: https://CRAN.R-project.org/view=Omics
omics,Single sample pathway analysis tools for omics data
User: cwieder
omics,An application to find and visualize circadian rhythms in time course data using extended harmonic oscillators.
User: delosh653
omics,A spatially explicit trait- and individual-based microbial systems modelling framework
Organization: dement-model
omics,Manage life sciences data using R and b-fabric - a WSDL/REST interface and a tool box; main focus on MS data
Organization: fgcz
Home Page: http://fgcz-bfabric.uzh.ch
omics,A collection of awesome things regarding all omics.
User: flowhub-team
omics,Prize-Collecting Steiner Forests for Interactomes
Organization: fraenkel-lab
Home Page: https://fraenkel-lab.github.io/OmicsIntegrator2
omics,GenoCraft: A Comprehensive, User-Friendly Web-Based Platform for High-Throughput Omics Data Analysis and Visualization
User: futianfan
Home Page: https://genocraft.stanford.edu/
omics,A simple python package for doublet detection in scRNA-seq data
User: gcs-zhn
Home Page: https://www.gcszhn.top/socube/
omics,Enzyme-constrained genome-scale models in python
Organization: ginkgobioworks
Home Page: https://geckopy.readthedocs.io/en/latest/
omics,PyIOmica (pyiomica) is a Python package for omics analyses.
User: gmiaslab
Home Page: https://pyiomica.readthedocs.io/en/latest/
omics,Picotti lab data analysis package.
User: jpquast
Home Page: https://jpquast.github.io/protti/
omics,An R package to plot interactive three-way differential expression analysis
User: katrionagoldmann
Home Page: https://katrionagoldmann.github.io/volcano3D/index.html
omics,Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"
User: krassowski
Home Page: https://doi.org/10.3389/fgene.2020.610798
omics,OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool development from high-throughput high-throughput omics experiments and other multidimensional datasets. Initially developed for miRNA-seq, RNA-seq and qPCR.
User: kstawiski
Home Page: https://kstawiski.github.io/OmicSelector/
omics,The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following article: https://www.nature.com/articles/s41587-021-00879-7
Organization: lamanno-epfl
Home Page: http://tomographer.info/
omics,๐ Welcome to Hivy Space, the home for All Anime, Animation, Comic and Manga Lovers
User: luk3d
Home Page: http://www.hivy.space
omics,Nature Medicine paper. A Multidimensional Precision Medicine Approach for Autism Subtype Identification.
User: luoyuanlab
omics,Development repository for the Bioconductor package 'mixOmics '
User: mixomicsteam
Home Page: http://mixomics.org/
omics,Patient 'omics data in OMOP format
Organization: ncbi-codeathons
omics,A python package for standardized and reproducible processing, analysis, and integration of clinical proteomics data
User: ngiangre
omics,๐งช ๐ฅ Transparent exploration of machine learning for biomarker discovery from proteomics and omics data
Organization: omicera
Home Page: http://OmicLearn.com
omics,From geospatial to spatial -omics
Organization: pachterlab
Home Page: https://pachterlab.github.io/voyager/
omics,Python port of the SummarizedExperiment container
User: pascallio
omics,Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab
Organization: rajewsky-lab
Home Page: https://rajewsky-lab.github.io/openst/
omics,Data and code associated with the Parkinson's Disease review paper by Schilder, Navarro & Raj (2021).
Organization: rajlabmssm
omics,Signaling Pathway Reconstruction Analysis Streamliner (SPRAS)
Organization: reed-compbio
omics,Framework for efficient high-dimensional association analyses.
User: roshchupkin
omics,A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)
User: saramasarone
omics,Muon for Julia
Organization: scverse
Home Page: https://scverse.github.io/Muon.jl/dev
omics,R package for High dimensional data analysis and integration with O2PLS!
User: selbouhaddani
Home Page: https://doi.org/10.1186/s12859-018-2371-3
omics,Jigsaw-like AggMap: A Robust and Explainable Multi-Channel Omics Deep Learning Tool
User: shenwanxiang
Home Page: https://bidd-aggmap.readthedocs.io/en/latest/
omics,A visualization tool for Systems-Level Interactive Data Exploration
User: soumitag
omics,A python library for multi omics included bulk and single cell RNA-seq analysis.
User: starlitnightly
Home Page: https://omicverse.readthedocs.io/
omics,BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data
Organization: transbiozi
omics,Matrix dissimilarity from the differences of Moments and sparsity
User: tubanlee
Home Page: https://doi.org/10.5281/zenodo.10406288
omics,Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis
Organization: ursgal
omics,Utils for loading HuBMAP data formats
Organization: vitessce
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