Topic: epigenomics Goto Github
Some thing interesting about epigenomics
Some thing interesting about epigenomics
epigenomics,A Suite of R Packages for NGS-based Epigenomic Data Analysis.
User: andrealauria104
epigenomics,Source code for the EpiVar browser, a web application to search for eQTL/epigenetic signal-associated variants and merge bigWig tracks by genotype.
Organization: c3g
Home Page: https://computationalgenomics.ca/tools/epivar
epigenomics,Bead-based single-cell atac processing
User: caleblareau
Home Page: http://caleblareau.github.io/bap
epigenomics,Molecular interactions inference from single-cell multi-omics data
Organization: cantinilab
Home Page: https://cantinilab.github.io/HuMMuS/
epigenomics,Tool to estimate purity of tumor samples exploiting DNA Methylation data
Organization: cgplab
epigenomics,Tools for epigenetic data analysis
User: constantingoeldel
epigenomics,snakemake workflow for random forest based feature selection on chromHMM data
User: crazyhottommy
epigenomics,U-Net for genomics
User: daquang
epigenomics,The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)
User: dohlee
epigenomics,:comet: Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments (Lee et al., PLOS Computational Biology. 2023)
User: dohlee
epigenomics,Suite of command-line software for high-performance graphical analysis of ChIP-seq/RNA-seq/ATAC-seq data
User: eblancoga
epigenomics,Analysis for "K27M in canonical and noncanonical H3 variants occurs in distinct oligodendroglial cell lineages in brain midline gliomas" (Jessa et al, Nature Genetics, 2022)
Organization: fungenomics
Home Page: https://fungenomics.github.io/HGG-oncohistones/
epigenomics,Multigranular Analysis of Regulatory Variants on the Epigenomic Landscape
User: fuxialexander
epigenomics,Differential Epigenetic Correlation Test
User: gabrielhoffman
Home Page: https://gabrielhoffman.github.io/decorate
epigenomics,Methods for training and interpretation of an ensemble of neural networks for multi-task functional prediction of accessibility or histone modifications from DNA sequence.
Organization: gifford-lab
epigenomics,Jointly characterizing epigenetic dynamics across multiple cell types
User: guanjue
epigenomics,The data preprocessing pipeline for the VISION project (for mouse data)
User: guanjue
epigenomics,Application for semi-automated genomic annotation.
Organization: hoffmangroup
Home Page: http://segway.hoffmanlab.org/
epigenomics,An R package designed to integrate and visualize various levels of epigenomic information, including but not limited to: ChIP, Histone, ATAC, and RNA sequencing. epiRomics is also designed to identify enhancer and enhanceosome regions from these data.
Organization: huising-lab
epigenomics,AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
User: itsvenu
Home Page: https://bioconductor.org/packages/ALPS
epigenomics,Toolkit for circRNA prediction by machine learning
User: johnlcd
epigenomics,Latent representation of the human pan-celltype epigenome through a deep recurrent neural network.
User: kevinbdsouza
epigenomics,Toolkit for single-cell DNA methylation analysis.
User: lhqing
Home Page: https://lhqing.github.io/ALLCools/intro.html
epigenomics,Epigenome-wide analysis of DNA methylation from Alzheimer's patients and unaffected controls
Organization: lieberinstitute
epigenomics,Python package to analyze DNA methylation data
User: liguowang
epigenomics,Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq
User: ma-compbio
epigenomics,Resource for summarizing and tracking new array samples published to NCBI's Gene Expression Omnibus (GEO) database.
User: metamaden
Home Page: https://metamaden.github.io/geoarraydigest/
epigenomics,Methods for summarizing and visualizing multi-biosample functional genomic annotations
User: meuleman
Home Page: https://epilogos.net
epigenomics,Cell type-specific Histone Acetylation Score
Organization: neurogenomics
epigenomics,Preprocessing of epigenomic data from fastq files.
Organization: neurogenomics
epigenomics,Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
Organization: nf-core
Home Page: https://nf-co.re/methylseq
epigenomics,Materials used during #NGSchool2017
Organization: ngschooleu
Home Page: https://ngschool.eu/2017
epigenomics,Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning with autoencoders
Organization: novartis
Home Page: http://peax.lekschas.de
epigenomics,Multiomix platform source code
Organization: omics-datascience
Home Page: https://multiomix.org
epigenomics,Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
Organization: pinellolab
epigenomics,This is a repository to show my experience analyzing different kinds of epigenomics data.
User: pipaber
Home Page: https://pipaber.github.io/Epigenomics/
epigenomics,Multiome GRN inference.
Organization: quadbio
Home Page: https://quadbio.github.io/Pando/
epigenomics,echoverse module: Annotate fine-mapping results
Organization: rajlabmssm
epigenomics,Magnipore: Differential single nucleotide changes of ONT signals
Organization: rnajena
epigenomics,
User: salbrec
epigenomics,Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague
User: schulzlab
epigenomics,Snakemake pipeline for analysis and normalization of ATAC-seq data starting from fastq.gz files.
User: sebastian-gregoricchio
epigenomics,An R/Bioconductor package for detecting chromatin state switches
User: sjessa
Home Page: https://bioconductor.org/packages/chromswitch
epigenomics,epigenome scale metabolic modeling for cancer metabolism
Organization: sriram-lab
epigenomics,BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data
Organization: transbiozi
epigenomics,ChromSCape
Organization: vallotlab
Home Page: https://vallotlab.github.io/ChromSCape/
epigenomics,Find risk snp in the LD region of GWAS snps by convolutional neural network
User: wugene
epigenomics,:dart: ChIP peak Annotation, Comparison and Visualization
Organization: yulab-smu
Home Page: https://onlinelibrary.wiley.com/share/author/GYJGUBYCTRMYJFN2JFZZ?target=10.1002/cpz1.585
epigenomics,Predicting regulatory DNA elements based on epigenomic signatures
User: yupenghe
epigenomics,
Organization: zhanggroup-mitchemistry
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.