Topic: bulk-rna-seq Goto Github
Some thing interesting about bulk-rna-seq
Some thing interesting about bulk-rna-seq
bulk-rna-seq,In this repository, I try to replicate the results of Rodriguez2017
User: amirreza-mousavi
bulk-rna-seq,my_RNA_seq_pipelines
User: auroramaurizio
bulk-rna-seq,:hibiscus: reference-free transcriptome assembly for short and long reads
Organization: bcgsc
bulk-rna-seq,Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
Organization: carpentries-incubator
Home Page: https://carpentries-incubator.github.io/bioc-rnaseq
bulk-rna-seq,Workflow management with Nextflow and nf-core
Organization: carpentries-incubator
Home Page: https://carpentries-incubator.github.io/workflows-nextflow/
bulk-rna-seq,This workflow performs an RNA-seq analysis from the sequencing output data to the differential expression analyses.
Organization: centuri-engineering
bulk-rna-seq,Deconvolution of CRC in organoid and fibroblast bulk data identifying epithelial cell types proportions
User: crhisto
bulk-rna-seq,DecoFlex deconvolution method for Omic data implemented as DecoFlexR
User: crhisto
bulk-rna-seq,SCDC project, originally on: https://github.com/meichendong/SCDC. Support sparse matrix among other additions.
User: crhisto
bulk-rna-seq,R Notebook with scripts for running the deconvolution of thymus bulk data identifying T-cell proportions
User: crhisto
bulk-rna-seq,Dalmolin Group's workflow for pre-processing, alignment and quantification of bulk RNA-seq data
Organization: dalmolingroup
Home Page: https://dalmolingroup.github.io/bulkrna/
bulk-rna-seq,a fully Bayesian approach to deconvolve tumor microenvironment
Organization: danko-lab
bulk-rna-seq,EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
Organization: digitalcytometry
bulk-rna-seq,User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
User: earmingol
bulk-rna-seq,An R tool to detect and correct batch-effects in gene-expression data (Microarray and bulk-RNAseq))
Organization: ebi-gene-expression-group
bulk-rna-seq,Project for the Transcriptomic course of "Bioinformatics for Computational Genomics" MSc
User: ecianini
bulk-rna-seq,Trajectory Inference of clinical data via Multi-commodity Flow
User: euxhenh
bulk-rna-seq,Bulk RNA-seq analytical pipeline, including using Snakemake to run main steps such as Kallisto read mapping, QC, Principal Component Analysis (PCA), and other downstream analysis.
Organization: fanzhanglab
bulk-rna-seq,CATD: Critical Assessment of Transcriptomics Deconvolution
Organization: functional-genomics
bulk-rna-seq,GenoCraft: A Comprehensive, User-Friendly Web-Based Platform for High-Throughput Omics Data Analysis and Visualization
User: futianfan
Home Page: https://genocraft.stanford.edu/
bulk-rna-seq,single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.
Organization: hms-dbmi
Home Page: https://docs.dseqr.com
bulk-rna-seq,The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.
Organization: igs
Home Page: https://umgear.org
bulk-rna-seq,A script used to calculate percent spliced-in (PSI) values from bulk RNA sequencing data.
User: jalwillcox
bulk-rna-seq,habenulaPilot project code repository
Organization: lieberinstitute
bulk-rna-seq,"Applied bioinformatics" is a course for Genetics Master Program at Genetics Department
User: luuloi
Home Page: http://fbb.hcmus.edu.vn/en/di-truyen-1468924343.html
bulk-rna-seq,bulk-RNAseq analysis for Transcriptomics Course 2021 (MSc Bioinformatics for Computational Genomics)
User: mariachiaragrieco
bulk-rna-seq,This workflow performs a metatranscriptomics and bulk RNAseq analysis from the sequencing output data to the differential expression analyses.
User: metavannier
bulk-rna-seq,EXPORT: Explainable VAE for ordinally perturbed transcriptomics data
User: namini94
bulk-rna-seq,a web-based R shiny application that wraps DESeq2 R package
User: nasqar
Home Page: http://nasqar.abudhabi.nyu.edu/deseq2shiny/
bulk-rna-seq,integrated RNA-seq Analysis Pipeline
User: nunofonseca
bulk-rna-seq,Code base for the Grant, Morales-Nebreda, and Markov et al., “Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia” Nature (2021) paper
Organization: nupulmonary
Home Page: https://www.nature.com/articles/s41586-020-03148-w
bulk-rna-seq,scRNA Analysis tutorials
User: poloarol
bulk-rna-seq,A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
User: starlitnightly
Home Page: https://starlitnightly.github.io/omicverse/
bulk-rna-seq,Workshop materials for the U-BDS bulk RNA-seq lessons
Organization: u-bds
Home Page: https://u-bds.github.io/bulk_RNA_seq_workshop/
bulk-rna-seq,RNA-seq pipeline, based on the ENCODE uniform processing pipeline
Organization: weng-lab
bulk-rna-seq,bulk RNA-seq of miRNA and mRNA profiling of human acute and chronic wounds
User: zhuang-bio
Home Page: https://www.xulandenlab.com/tools
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.