Topic: pacbio-sequencing Goto Github
Some thing interesting about pacbio-sequencing
Some thing interesting about pacbio-sequencing
pacbio-sequencing,:hibiscus: reference-free transcriptome assembly for short and long reads
Organization: bcgsc
pacbio-sequencing,Identify and characterize repeat expansions in long read data
User: caspargross
pacbio-sequencing,code getter for illumina, pacbio, oxford long reads alignments.
User: gauravcodepro
pacbio-sequencing,awk code for pacbiohifi alignments from verkko and other genome assembly methods
User: gauravcodepro
pacbio-sequencing,bcftools for dealing with bcf files.
User: gauravcodepro
pacbio-sequencing,a conda yaml for the genomehifi-contiguity analysis.
User: gauravcodepro
pacbio-sequencing,lastz alignment sorting and plotting the alignment length
User: gauravcodepro
pacbio-sequencing,pacbio or oxford nanopore long reads repeat coverage estimation.
User: gauravcodepro
pacbio-sequencing,pattern detection in R using the stringR package for the pacbio and the oxford nanopore reads
User: gauravcodepro
pacbio-sequencing,long_read_polyATGC_trimmer using regular expression.
User: gauravcodepro
pacbio-sequencing,a pacbiohifi read check for the quick view of the read types.
User: gauravcodepro
pacbio-sequencing,pacbiohifi sequencing genomes analysis using the verkko, hifiasm and the genomeasm4pg.
User: gauravcodepro
pacbio-sequencing,genome assembly to pangraphs from illumina to long reads.
User: gauravcodepro
pacbio-sequencing,Re-implementation of J. Beaulaurier et al's SMSN strategy, using the default PacBio tools
User: gdelevoye
pacbio-sequencing,Snakemake workflow for SM-PATseq
User: ibenjame
pacbio-sequencing,A systematic survey of algorithmic foundations and methodologies across 107 alignment methods (1988-2021), for both short and long reads. We provide a rigorous experimental evaluation of 11 read aligners to demonstrate the effect of these underlying algorithms on speed and efficiency of read alignment. Described by Alser et al. at https://arxiv.org/abs/2003.00110.
Organization: mangul-lab-usc
pacbio-sequencing,Patch for LRSDAY v1.6 for Debian-based and SUSE-based OS.
User: nicolo-tellini
Home Page: https://github.com/yjx1217/LRSDAY
pacbio-sequencing,A battery of methylation tools for PacBio HiFi reads
Organization: pacificbiosciences
pacbio-sequencing,De novo repeat inference from long reads
Organization: revantorg
pacbio-sequencing,NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data
Organization: wglab
pacbio-sequencing,Detect and phase minor SNVs from long-read sequencing data
User: zhixingfeng
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