Topic: dada2 Goto Github
Some thing interesting about dada2
Some thing interesting about dada2
dada2,Amplicon sequence processing workflow using QIIME 2 and Snakemake
Organization: aomlomics
dada2,CUSO Microbiome analysis workshop 2020
User: bathyscapher
dada2,Introduction to 16S Amplicon Sequencing Data Analysis using DADA2
User: best-tufts
Home Page: https://best-tufts.github.io/intro_to_16S/intro16S/01_metabarcoding-intro/
dada2,Docker convenience image containing R and the DADA2 package (plus dependencies), used for processing amplicon data.
Organization: blekhmanlab
Home Page: https://hub.docker.com/r/blekhmanlab/dada2/
dada2,Qiime2 and DADA2 are one of the latest bioinformatics tools used in 16S RNA analysis. The current Qiime2 and DADA2 pipelines support End to End 16S RNA analysis, among other analyses.
User: bryanabuchery
dada2,Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
User: cafferychen777
Home Page: https://www.microbiomestat.wiki/
dada2,Processing NEON soil microbe marker gene sequence data into ASV tables.
User: claraqin
dada2,Metabarcoding analysis pipeline, using DADA2 and qiime2
User: davidescarpetta
dada2,Here we discuss strategies and workflows to analyse metagenomics datasets
User: digo4
dada2,:ocean: 16S rRNA microbiome data analysis workflow using DADA2 and R on a high performance cluster using SLURM
User: erictleung
dada2,En este repositorio se encuentran todos los scripts utilizados para mi tesis de licenciatura, titulada: "Análisis de perfiles funcionales de la microbiota intestinal de pacientes con trastorno depresivo mayor", la cual utiliza un lenguaje de programación en R y Phyton.
User: gabrielatof
dada2,A repository containing a demo microbiome workflow for R and Python
User: glickmac
dada2,A quick and user-friendly pipeline to go from raw fastq data from Illumina (paired-end sequencing) to processed ASVs and Taxonomic data.
User: headonpillow
dada2,A pipeline to analyse marine fish amplicon data
User: hobbeist
dada2,Amplicon sequencing workflow with snakemake and dada2
Organization: imcbioinformatics
dada2,Workflow stages and data for Morando, Magasin et al. 2024
User: jdmagasin
dada2,DADA2 pipeline for nitrogenase (nifH) amplicon sequences (Illumina paired-end)
User: jdmagasin
dada2,Modified dada2 script, used for master's thesis project. Takes fast2 files and outputs ASV table, taxonomy table, phylogenetic tree, and input files for PICRUSt2
User: jjcolgan
dada2,A workflow for processing CCS reads of AMF to ASVs using DADA2
User: katjako
dada2,Analysis of Salmo trutta gametes and embryo microbiome project in Vals/Trun, Switzerland
User: megaptera-helvetiae
dada2,Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project
Organization: microucph
Home Page: https://microucph.github.io/amplicon_data_analysis/
dada2,This repositorey contain the dada2 pipeline used to process the illumina sequence reads in the manuscript "Temporal variability in the growth-enhancing effects of different bacteria within the microbiome of the diatom Actinocyclus sp." (DOI: 10.3389/fmicb.2023.1230349)
User: ninefr09
dada2,Dadaist2 🟨 Highway to R
Organization: quadram-institute-bioscience
Home Page: https://quadram-institute-bioscience.github.io/dadaist2/
dada2,all my dirty r-scripts
User: remimaglione
dada2,Reconstructing a dada2 pipeline with batch processing using an OOP design
User: ryanc16
dada2,The purpose of this repository is to store R scripts that were used for 16S community compositional analyses.
User: sevanesaian
dada2,Analysis of 16S rRNA (dada2 amplicon sequence variants) from human volunteers given various vaccines following two different antibiotics treatments compared to no antibiotics.
User: shandley
dada2,Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
User: shandley
dada2,Bioinformatic data analysis scripts and pipelines
User: xuan13hao
dada2,Working Demo on 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Visit repo website for HTML output
User: ycl6
Home Page: https://ycl6.github.io/16S-Demo/
dada2,16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/
User: ycl6
dada2,This is repository of amplicon sequencing data and bioinformatics pipeline codes for the nectar microbiome of Monkey Flowers.
User: yingtongaamandawu
dada2,neonMicrobe: Processing NEON soil microbe marker gene sequence data into ASV tables, duplicated from https://github.com/claraqin/neonMicrobe
Organization: zhulabgroup
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