uc-bd2k / grep2 Goto Github PK
View Code? Open in Web Editor NEWGEO RNA-seq Experiments Processing Pipeline
Home Page: https://cran.r-project.org/web/packages/GREP2/index.html
GEO RNA-seq Experiments Processing Pipeline
Home Page: https://cran.r-project.org/web/packages/GREP2/index.html
Hi. I think in the file run_fastqc.R this
if(!dir.exists("fastqc"))
should be
if(!dir.exists(paste0(destdir,"/fastqc")))
I follow the code to download SRA but it error no such directory, how to fix it, thank you?
for(i in 1:length(srr_id)){
prefetch_workspace=NULL,ascp_path=NULL)
All SRA files are downloaded successfully. 2021-03-22 16:21:28
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