Comments (12)
Cannot install deeptime.
----- Installing 'deeptime==0.4.2' -----
Collecting deeptime==0.4.2
Using cached deeptime-0.4.2.tar.gz (390 kB)
Installing build dependencies: started
Installing build dependencies: still running...
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'done'
Preparing metadata (pyproject.toml): started
Preparing metadata (pyproject.toml): finished with status 'done'
Requirement already satisfied: threadpoolctl in c:\users\pandreou\appdata\local\programs\python\python310\lib\site-packages (from deeptime==0.4.2) (3.1.0)
Requirement already satisfied: scipy in c:\users\pandreou\appdata\local\programs\python\python310\lib\site-packages (from deeptime==0.4.2) (1.9.0)
Requirement already satisfied: numpy in c:\users\pandreou\appdata\local\programs\python\python310\lib\site-packages (from deeptime==0.4.2) (1.23.2)
Requirement already satisfied: scikit-learn in c:\users\pandreou\appdata\local\programs\python\python310\lib\site-packages (from deeptime==0.4.2) (1.1.2)
Requirement already satisfied: joblib>=1.0.0 in c:\users\pandreou\appdata\local\programs\python\python310\lib\site-packages (from scikit-learn->deeptime==0.4.2) (1.1.0)
Building wheels for collected packages: deeptime
Building wheel for deeptime (pyproject.toml): started
Building wheel for deeptime (pyproject.toml): finished with status 'error'
error: subprocess-exited-with-error
Building wheel for deeptime (pyproject.toml) did not run successfully.
exit code: 1
[295 lines of output]
C:\Users\pandreou\AppData\Local\Temp\pip-build-env-nhmdyqlg\overlay\Lib\site-packages\setuptools\config_apply_pyprojecttoml.py:196: UserWarning: install_requires
overwritten in pyproject.toml
(dependencies)
warnings.warn(msg)
-- Trying "Ninja (Visual Studio 17 2022 x64 v143)" generator
--
Not searching for unused variables given on the command line.
CMake Error: CMake was unable to find a build program corresponding to "Ninja". CMAKE_MAKE_PROGRAM is not set. You probably need to select a different build tool.
-- Configuring incomplete, errors occurred!
See also "C:/Users/pandreou/AppData/Local/Temp/pip-install-dpfr52i_/deeptime_34db8d17a86042198c72f43c5b8e0ad5/_cmake_test_compile/build/CMakeFiles/CMakeOutput.log".
-- Trying "Ninja (Visual Studio 17 2022 x64 v143)" generator - failure
-- Trying "Visual Studio 17 2022 x64 v143" generator
--
Not searching for unused variables given on the command line.
CMake Error at CMakeLists.txt:2 (PROJECT):
Generator
Visual Studio 17 2022
could not find any instance of Visual Studio.
-- Configuring incomplete, errors occurred!
See also "C:/Users/pandreou/AppData/Local/Temp/pip-install-dpfr52i_/deeptime_34db8d17a86042198c72f43c5b8e0ad5/_cmake_test_compile/build/CMakeFiles/CMakeOutput.log".
-- Trying "Visual Studio 17 2022 x64 v143" generator - failure
-- Trying "Ninja (Visual Studio 16 2019 x64 v142)" generator
--
Not searching for unused variables given on the command line.
CMake Error: CMake was unable to find a build program corresponding to "Ninja". CMAKE_MAKE_PROGRAM is not set. You probably need to select a different build tool.
-- Configuring incomplete, errors occurred!
See also "C:/Users/pandreou/AppData/Local/Temp/pip-install-dpfr52i_/deeptime_34db8d17a86042198c72f43c5b8e0ad5/_cmake_test_compile/build/CMakeFiles/CMakeOutput.log".
-- Trying "Ninja (Visual Studio 16 2019 x64 v142)" generator - failure
-- Trying "Visual Studio 16 2019 x64 v142" generator
--
Not searching for unused variables given on the command line.
CMake Error at CMakeLists.txt:2 (PROJECT):
Generator
Visual Studio 16 2019
could not find any instance of Visual Studio.
-- Configuring incomplete, errors occurred!
See also "C:/Users/pandreou/AppData/Local/Temp/pip-install-dpfr52i_/deeptime_34db8d17a86042198c72f43c5b8e0ad5/_cmake_test_compile/build/CMakeFiles/CMakeOutput.log".
-- Trying "Visual Studio 16 2019 x64 v142" generator - failure
-- Trying "Ninja (Visual Studio 15 2017 x64 v141)" generator
--
Not searching for unused variables given on the command line.
CMake Error: CMake was unable to find a build program corresponding to "Ninja". CMAKE_MAKE_PROGRAM is not set. You probably need to select a different build tool.
-- Configuring incomplete, errors occurred!
See also "C:/Users/pandreou/AppData/Local/Temp/pip-install-dpfr52i_/deeptime_34db8d17a86042198c72f43c5b8e0ad5/_cmake_test_compile/build/CMakeFiles/CMakeOutput.log".
-- Trying "Ninja (Visual Studio 15 2017 x64 v141)" generator - failure
-- Trying "Visual Studio 15 2017 x64 v141" generator
--
Not searching for unused variables given on the command line.
CMake Error at CMakeLists.txt:2 (PROJECT):
Generator
Visual Studio 15 2017
could not find any instance of Visual Studio.
-- Configuring incomplete, errors occurred!
See also "C:/Users/pandreou/AppData/Local/Temp/pip-install-dpfr52i_/deeptime_34db8d17a86042198c72f43c5b8e0ad5/_cmake_test_compile/build/CMakeFiles/CMakeOutput.log".
-- Trying "Visual Studio 15 2017 x64 v141" generator - failure
-- Trying "NMake Makefiles (Visual Studio 17 2022 x64 v143)" generator
--
Not searching for unused variables given on the command line.
CMake Error at CMakeLists.txt:2 (PROJECT):
Running
Failed to build deeptime
'nmake' '-?'
failed with:
The system cannot find the file specified
-- Configuring incomplete, errors occurred!
See also "C:/Users/pandreou/AppData/Local/Temp/pip-install-dpfr52i_/deeptime_34db8d17a86042198c72f43c5b8e0ad5/_cmake_test_compile/build/CMakeFiles/CMakeOutput.log".
-- Trying "NMake Makefiles (Visual Studio 17 2022 x64 v143)" generator - failure
-- Trying "NMake Makefiles (Visual Studio 16 2019 x64 v142)" generator
--
Not searching for unused variables given on the command line.
CMake Error at CMakeLists.txt:2 (PROJECT):
Running
'nmake' '-?'
failed with:
The system cannot find the file specified
-- Configuring incomplete, errors occurred!
See also "C:/Users/pandreou/AppData/Local/Temp/pip-install-dpfr52i_/deeptime_34db8d17a86042198c72f43c5b8e0ad5/_cmake_test_compile/build/CMakeFiles/CMakeOutput.log".
-- Trying "NMake Makefiles (Visual Studio 16 2019 x64 v142)" generator - failure
-- Trying "NMake Makefiles (Visual Studio 15 2017 x64 v141)" generator
--
Not searching for unused variables given on the command line.
CMake Error at CMakeLists.txt:2 (PROJECT):
Running
'nmake' '-?'
failed with:
The system cannot find the file specified
-- Configuring incomplete, errors occurred!
See also "C:/Users/pandreou/AppData/Local/Temp/pip-install-dpfr52i_/deeptime_34db8d17a86042198c72f43c5b8e0ad5/_cmake_test_compile/build/CMakeFiles/CMakeOutput.log".
-- Trying "NMake Makefiles (Visual Studio 15 2017 x64 v141)" generator - failure
scikit-build could not get a working generator for your system. Aborting build.
Building windows wheels for Python 3.10 requires Microsoft Visual Studio 2022.
Get it with "Visual Studio 2017":
https://visualstudio.microsoft.com/vs/
Or with "Visual Studio 2019":
https://visualstudio.microsoft.com/vs/
Or with "Visual Studio 2022":
https://visualstudio.microsoft.com/vs/
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for deeptime
ERROR: Could not build wheels for deeptime, which is required to install pyproject.toml-based projects
----- Failed to install 'deeptime==0.4.2' -----
from deeptime.
Hi, if you try to install deeptime with pip, it will locally compile the code. This only works, if you have visual studio installed (as indicated by the error message). Alternatively, you can use the precompiled binaries shipped by anaconda with conda install -c conda-forge deeptime
.
from deeptime.
from deeptime.
Hey, could you post the entire error message? and/or invoke with pip install deeptime -v
? you can also attach it here as text file (drag and drop).
from deeptime.
from deeptime.
from deeptime.
Hey thanks for this information! It still looks like Visual Studio is not set up correctly. In any case, I went ahead and compiled the trunk version of deeptime on windows for you, it is attached to this post. You can install it by first unzipping and then with pip install deeptime-0.4.2+14.g153d9f6-cp310-cp310-win_amd64.whl
. Let me know if that worked 🙂
deeptime-0.4.2+14.g153d9f6-cp310-cp310-win_amd64.zip
from deeptime.
from deeptime.
from deeptime.
Great, you're welcome!
from deeptime.
from deeptime.
Hi there, this looks like your whole environment is somehow broken. I recommend removing anaconda and installing miniforge. Then simply conda install deeptime
. 🙂
from deeptime.
Related Issues (20)
- Error when installing from local repo via pip HOT 4
- TICA fit-once transform-many HOT 6
- Automate generating bdist wheels HOT 1
- Allowing weights for VAMP dimensionality reduction HOT 6
- Error importing deeptime with scikit-learn 1.2.0 HOT 4
- About applying Deeptime to molecular dynamics simulation trajectories on protien HOT 3
- Handling parallel simulations HOT 1
- Implied timescales from deeptime.decomposition.TICA HOT 2
- [Bug] At least one of the given states is not contained in this model HOT 2
- VAMPnet gives highly fluctuating score results HOT 1
- Bayesian Markov models give different MFPT
- How to compute any actual quantity of the coarse-grained kinetics with employing the fuzzy memberships? HOT 7
- Installation without conda and pip HOT 3
- Which version of VAMPNets is there? HOT 1
- deeptime cannot be installed on Mac computers with Apple Silicon and Python 3.12.0. HOT 4
- Does one need identical features to compare between related systems? HOT 4
- Example/tutorial for dealing with MD trajectories HOT 1
- Applying TICA to ragged feature vectors HOT 2
- Cross Validation score for MaximumLikelihoodMSMs and BayesianMSMs HOT 2
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from deeptime.