dermatologist/ckblib

Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J

Machine Learning & AI on FHIR, OSCAR, OpenMRS & OHDSI

Recent Projects!

• Template for multi-modal machine learning in healthcare using Kedro
• Collaboratively write journal papers or thesis in MS-Word and compile it to LaTeX using any template.
• Pyomop - Python package for managing OHDSI clinical data models.
• Fhiry: FHIR -> pandas.dataframe for AI and ML
• FHIRFormJS: NPM module to convert FHIR Questionnaire JSON to JSON Schema for form rendering
• QRMine: Qualitative Research support tools in Python
• omopfhirmap: command-line tool for OMOP CDM <-> FHIR mapping
• ckblib: Tools to create a clinical knowledge graph from biomedical literature

Issues that need help! 🧑‍🔧

• Support for LLM based FHIR flattening
• UMLSjs authentication method upgrade
• Failed update hapi-fhir to > 5 #49

Recent blog posts

Locally hosted LLMs

LLM-in-the Loop CQL execution

Come, join us to make generative AI in healthcare more accessible!

Why is RAG not suitable for all Generative AI applications in healthcare?

Grounding vs RAG in Healthcare Applications

To or not to LangChain

Translational Research in Digital Health and Gen AI

Architecting LLM solutions for healthcare – Part II

Navigating the Complexities of Gen AI in Medicine: 5 Development Blunders to Avoid

Medprompt: How to architect LLM solutions for healthcare.

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Into health IT? Let's connect!

ckblib's Issues

同学，您这个项目引入了380个开源组件，存在14个漏洞，辛苦升级一下

检测到 dermatologist/ckblib 一共引入了380个开源组件，存在14个漏洞

漏洞标题：Netty 安全漏洞
缺陷组件：io.netty:[email protected]
漏洞编号：CVE-2021-43797
漏洞描述：Netty是Netty社区的一款非阻塞I/O客户端-服务器框架，它主要用于开发Java网络应用程序，如协议服务器和客户端等。
Netty 存在安全漏洞，该漏洞源于Netty是一个异步事件驱动的网络应用框架，用于快速开发可维护的高性能协议服务器和客户端。版本4.1.7.1之前的Netty。当控件字符出现在头名称的开头和结尾时，Final将跳过它们。相反，它应该很快失败，因为这是规范不允许的，可能会导致HTTP请求走私。如果没有进行验证，netty可能会在将这些头名称转发给另一个用作代理的远程系统之前对其进行“消毒”。这个远程系统无法再看到无效的使用，因此无法看到
影响范围：(∞, 4.1.71.Final)
最小修复版本：4.1.71.Final
缺陷组件引入路径：com.canehealth.ckblib:[email protected]>org.springframework.boot:[email protected]>org.springframework.boot:[email protected]>io.projectreactor.netty:[email protected]>io.netty:[email protected]

另外还有14个漏洞，详细报告：https://mofeisec.com/jr?p=i47205

fix: typo in config.yml

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