dhimmel/pubmedpy

Utilities for interacting with NCBI EUtilities relating to PubMed

Utilities for interacting with NCBI EUtilities relating to PubMed

pubmedpy is a Python 3 package for interacting with PubMed's E-Utilities API as well the PubMed Central OAI-PMH Service

Projects

This package was created while working on https://github.com/greenelab/iscb-diversity. However, it draws on code and experience from several pre-existing projects. Parts of the codebase derives from or supported the analyses for the following analyses:

1. Analysis of ISCB honorees and keynotes reveals disparities
   Trang T. Le, Daniel S. Himmelstein, Ariel A. Hippen Anderson, Matthew R. Gazzara, Casey S. Greene
   Manubot (2020-01-30) https://greenelab.github.io/iscb-diversity-manuscript/

2. On author versus numeric citation styles
   Daniel Himmelstein
   Satoshi Village (2018-03-12) https://blog.dhimmel.com/citation-styles/

3. The history of publishing delays
   Daniel Himmelstein
   Satoshi Village (2016-02-10) https://blog.dhimmel.com/history-of-delays/

4. Publication delays at PLOS and 3,475 other journals
   Daniel Himmelstein
   Satoshi Village (2015-06-29) https://blog.dhimmel.com/plos-and-publishing-delays/