Topic: pubmed Goto Github
Some thing interesting about pubmed
Some thing interesting about pubmed
pubmed,Parse PubMed XML into a data frame in R
User: christopherbelter
pubmed,Sample code and explanations for doing basic text mining tasks in R
User: christopherbelter
pubmed,A Python package to download full article PDFs from OA publications
User: ddomingof
pubmed,A text mining tool for developing visual and interactive relationship networks from PubMed article information.
Organization: developmentac
pubmed,Trends in scientific publishing delays
User: dhimmel
Home Page: http://blog.dhimmel.com/history-of-delays/
pubmed,Enhance your knowledge in medical research with the help of LLM and RAG.
User: dsupertramp
pubmed,Turbocharge a PubMed literature rather than clicking and clicking and clicking on Google Scholar
User: dvklopfenstein
pubmed,A web tool that helps biomedical researchers understand how their work is being used by others, by analyzing the content in papers that cite them
User: hclent
pubmed,Computing term cooccurrence in MEDLINE
Organization: hetio
Home Page: https://doi.org/10.15363/thinklab.d67
pubmed,一个批量下载pubmed免费文献的python小工具
User: hiddenblue
pubmed,PubMed scraper for async search on a list of keywords and concurrent extraction of all found URLs, returning a DataFrame/CSV containing all article data (title, abstract, authors, affiliations, etc)
User: iliazenkov
pubmed,Batch scripts curating BioRxiv and PubMed articles by using Altmetric score.
User: imamachi-n
pubmed,Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!
User: jakelever
pubmed,A framework for keeping biomedical text mining result up-to-date
User: jakelever
pubmed,Tools to scrape publication metadata from pubmed, arxiv, medrxiv and chemrxiv.
User: jannisborn
pubmed,Scientific literature explorer. Runs a Pubmed or Semantic Scholar search and allows user to explore high-level structure of result papers
Organization: jetbrains-research
pubmed,Automatic generation of reviews of scientific papers
Organization: jetbrains-research
Home Page: https://arxiv.org/abs/2010.04147
pubmed,Findpapers: A tool for helping researchers who are looking for related works
User: jonatasgrosman
pubmed,SciFive: a text-text transformer model for biomedical literature
User: justinphan3110
Home Page: https://arxiv.org/abs/2106.03598
pubmed,BioDEX: Large-Scale Biomedical Adverse Drug Event Extraction for Real-World Pharmacovigilance.
User: kareldo
pubmed,A high performance bibliographic information service: https://biblio-glutton.readthedocs.io
User: kermitt2
pubmed,Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on top of Entrez E-utilities API.
User: krassowski
Home Page: https://easy-entrez.readthedocs.io/en/latest/
pubmed,Code used to extract and analyse gender data from PubMed and arXiv in 2018 PLOS Biol paper
User: lukeholman
pubmed,I, Librarian - open-source version of a PDF managing SaaS.
User: mkucej
Home Page: https://i-librarian.net
pubmed,EasyPubMed is an extension to make new PubMed easy to use
User: naivenaive
pubmed,Write PubMed search results with two display options (citation or listview) to PDF or Word
User: nalomran
pubmed,Subclassification of disease states based on the intersection of literature and expression
Organization: ncbi-hackathons
pubmed,BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences
Organization: ncbi-nlp
pubmed,BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).
Organization: ncbi-nlp
Home Page: https://arxiv.org/abs/1906.05474
pubmed,Data Collection API for pubmed
Organization: nfflow
pubmed,VerifAI project is NGI Search funded initiative to build open-source biomedical generative question-answering engine with referenced and verifiable answers (using posteriori model)
User: nikolamilosevic86
Home Page: https://verifai-project.com
pubmed,Fetches PubMed article IDs (PMIDs) from email inbox, then crawls PubMed, Google Scholar and Sci-Hub for respective PDF files.
User: pykong
pubmed,A web scrapping method to extract journal information from PubMed and Google Scholar using Python.
User: rafsanlab
pubmed,R Interface to Europe PMC RESTful Web Service
Organization: ropensci
Home Page: https://docs.ropensci.org/europepmc
pubmed,NLP framework in python for entity recognition and relationship extraction
Organization: rostlab
pubmed,Pull high-quality, efficient embeddings for PubMed, arXiv and Wikipedia from Huggingface and use for local LLM inference/Retrieval Augmented Generation (RAG)
Organization: somewheresystems
pubmed,MedDistant19: Towards an Accurate Benchmark for Broad-Coverage Biomedical Relation Extraction (COLING 2022)
User: suamin
Home Page: https://aclanthology.org/2022.coling-1.198
pubmed,Toolkits for NCBI Pubmed
User: suqingdong
Home Page: https://suqingdong.github.io/pypubmed/
pubmed,Node.js library for the Tychos API. The data transformation layer for AI.
Organization: tychos-ai
Home Page: https://www.tychos.ai
pubmed,Python library for the Tychos API. The data transformation layer for AI.
Organization: tychos-ai
Home Page: https://www.tychos.ai
pubmed,Scientific Paper Management Tool
User: ursjoss
pubmed,SUMPUBMED: Summarization Dataset of PubMed Scientific Article
User: vgupta123
Home Page: https://vgupta123.github.io/docs/sumpubmed_mainpaper.pdf
pubmed,ReCiter: an enterprise open source author disambiguation system for academic institutions
Organization: wcmc-its
pubmed,webpage crawling tools for pubmed, google scholar and rss
User: yufree
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