ebi-ait Goto Github PK

ag2pi-2-ingest

Repository dedicated to the tool development necessary to ingest datasets from the AG2PI into ingest and, finally, into terra

ait-service-catalog

ait-web

Static webpage for AIT and its tools

angular-visual-framework

biostudies-client

Python client library for wrapping and handling BioStudies REST API calls

cellxgene-wrangling

This repo is for tracking work related to wrangling datasets for CellxGene, associated tasks and for maintaining related documentation.

cineca

A repository for the CINECA project, https://www.cineca-project.eu

covid-excel-utils

Tools to transform and validate covid data portal metadata files.

covid-util

Tool for CLI transfer of COVID-19 data to upload areas and adminstration of those areas

data-catalogue

A generic data catalogue web app to serve the AIT team projects.

data-catalogue-frontend

data-catalogue-frontend-elwazi

eLwazi configuration to run data-catalogue-frontend

data-catalogue-microbe

data-cube

dcp-cli

HCA Data Coordination Platform Command Line Interface

dcp-ingest-central

Central point of access for the Ingestion Service of the HCA DCP

ebi-ait.github.io

Website repo

excel-submission-broker

A library written in Python to handle spreadsheet submission brokering into EBI archives.

fairplus

A repository for outputs of the FAIRPlus project

fastq_utils

Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.

geo_to_hca

Tools to assist in the automatic conversion of GEO metadata into HCA metadata standard

gitlab-ci-templates

Templates for GitLab CI process

hca-documentation

A repository to keep documentation related to hca services

hca-ebi-dev-team

Repository for hca ebi dev team agile management. See zenhub board

hca-ebi-user-value

Planning repository for the value we get out of HCA work. Other planning repos (e.g. hca-ebi-dev-team) integrate with this one

hca-ebi-wrangler-central

This repo is for tracking work related to wrangling datasets for the HCA, associated tasks and for maintaining related documentation.

hca-matrix-downloader

Python client for the DCP matrix service (prototype)

hca-metadata-community

HCA metadata standard, HCA metadata schemas and HCA metadata community calls

hca-to-dsp-tools

Repository that contains code to convert HCA submissions to DSP submissions

hca-to-scea-tools

Helpers and tools to assist in the conversion of HCA datasets into SCEA