ebi-ait / covid-excel-utils Goto Github PK
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Tools to transform and validate covid data portal metadata files.
Change ExcelLoader
to take a configuration object that specifies:
Also Possibly:
covid example:
object name = Row 1
attribute name = Row 2
units = Row 5
Example A:
object name = sheet name
attribute name = Row 1
units = Row 2
Example B
object_name.attribute_name = Row 1
I checked the code relating to BioSamples submission and I can not see anywhere if we handle errors relating to AAP fault or when BioSamples would return other then success. It looks like we only handle the happy path in the code.
Allow any specific checklist to be specified.
Probably create a ChecklistValidator
class from the base of SchemaValidator
or DockerValidator
SchemaValidator
When validating and saving results to the excel file, 2 columns are added between the existing column A and B.
This is causing two issues:
The first column of the covid excel file is used for instructions to the user that the loader can remove so that column A is used to report the number or errors.
Keep in mind that we want to head in the direction of #12, but adding that functionality is out of scope to this issue.
I noticed that in the spreadsheet blank_v3_genome_assemblies.xlsx
there are values for 'accepted values' in the 5th row rather than the 4th row.
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