epsylon/diana

DiaNA can search and recognize patterns in DNA sequences.

diana's Issues

+ Total [PATTERNS FOUND!]: [ 2317332144977 ]

No es un request... te lo dejo aquí Alex.

• GENOMES DETECTED: 60
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• VERSION:

  • v0.3_beta - (rev:19032020)

• SOURCES:

  • https://code.03c8.net/epsylon/diana
  • https://github.com/epsylon/diana

• CONTACT:

  • [email protected] - (https://03c8.net)

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• CHOOSE: (S)earch, (L)ist, (T)rain or (R)eport: R

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[LIBRE-AI] [REPORTING] [STATISTICS] ... -> [STARTING!]

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[LIBRE-AI] [REPORTING] -STORAGE- [STATISTICS]:

• Total [FILE SIZES]: 438.14 MB

  • [DATASET]: 3.07 KB

  • [LIST]: 6.59 MB

  • [BRAIN]: 431.55 MB

• [LATEST UPDATE]: 'Fri Apr 23 10:34:31 2021'

  • File: 'datasets/genome.list'

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[LIBRE-AI] [REPORTING] -COLLECTION- [STATISTICS]:

• [SETTINGS] Using [MAX. LENGTH] for range [PATTERN] = [ 50 ]

  • [PATTERNS LEARNED!]: [ 113139 ]

    • [length = 2] : [ 16 ]
    • [length = 3] : [ 64 ]
    • [length = 4] : [ 262 ]
    • [length = 5] : [ 1213 ]
    • [length = 6] : [ 5918 ]
    • [length = 7] : [ 18957 ]
    • [length = 8] : [ 54619 ]
    • [length = 9] : [ 30817 ]
    • [length = 10]: [ 1273 ]

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[LIBRE-AI] [REPORTING] -ANALYSIS- [STATISTICS]:

• Total [DNA SECUENCES]: [ 60 ]

  • [LARGEST] : Virus/Haemophilus Influenza/Haemophilus influenzae Rd KW20.genome [ 1830139 bp linear RNA ]
  • [SHORTEST]: Virus/Sacbrood/Sacbrood.genome [ 8833 bp linear RNA ]

• Total [NUCLEOTIDS]: [ 3359402 ]

  • [A] Adenine : 1025585
  • [G] Guanine : 655405
  • [C] Cytosine : 636714
  • [T] Thymine : 1041488 <- [MAX]
  • [N] ANY : 210

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[LIBRE-AI] [REPORTING] -RESEARCHING- [STATISTICS]:

• Searching -[ 113139 ]- [PATTERNS LEARNED!] in -[ 60 ]- [DNA SECUENCES]:

  • Total [PATTERNS FOUND!]: [ 2317332144977 ]

    • [MOST-PRESENT!]: [ 23049111 ] time(s) -> [ CTCAGTACG ]

      • [length = 2] : [ 5154855 ] time(s) -> [ TT ]
      • [length = 3] : [ 9578417 ] time(s) -> [ TGA ] (Opal) Stop
      • [length = 4] : [ 12205328 ] time(s) -> [ CTGT ]
      • [length = 5] : [ 15700135 ] time(s) -> [ TTAAC ]
      • [length = 6] : [ 19446270 ] time(s) -> [ GGGTCA ]
      • [length = 7] : [ 22632754 ] time(s) -> [ ATGTATG ]
      • [length = 8] : [ 23049090 ] time(s) -> [ ACTACTTC ]
      • [length = 9] : [ 23049111 ] time(s) -> [ CTCAGTACG ]
      • [length = 10] : [ 22632527 ] time(s) -> [ AGTACCATAA ]

    • [LESS-PRESENT!]: [ 181047 ] time(s) -> [ GA ]

      • [length = 2] : [ 181047 ] time(s) -> [ GA ]
      • [length = 3] : [ 1070052 ] time(s) -> [ GTG ] (V) Valine
      • [length = 4] : [ 1080544 ] time(s) -> [ GTTC ]
      • [length = 5] : [ 5649823 ] time(s) -> [ GTGCG ]
      • [length = 6] : [ 8681922 ] time(s) -> [ CAGCCA ]
      • [length = 7] : [ 10799796 ] time(s) -> [ TAAAATA ]
      • [length = 8] : [ 13282281 ] time(s) -> [ TAGATGGT ]
      • [length = 9] : [ 19513771 ] time(s) -> [ GAGGGTTTA ]
      • [length = 10] : [ 20208255 ] time(s) -> [ TAAGTCTGCG ]

    • [LARGEST] : [ 5 ] bp linear RNA

    • [SHORTEST]: [ 8 ] bp linear RNA

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• Searching -[ 49 ]- [UNIVERSAL PRIMER PAIRS!] in -[ 60 ]- [DNA SECUENCES]:

  • Total [UNIVERSAL PRIMER PAIRS FOUND!]: [ 0 ]

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• Searching -[ 64 ]- [AMINO ACIDS!] in -[ 60 ]- [DNA SECUENCES]:

  • Total [AMINO ACIDS FOUND!]: [ 7374720 ]

    • [MOST-PRESENT!]: (R) Arginine

    • [LESS-PRESENT!]: (F) Phenylalanine

      • (F) Phenylalanine : 7260 time(s)
      • (L) Leucine : 108180 time(s)
      • (I) Isoleucine : 102690 time(s)
      • (M) Methionine : 41430 time(s)
      • (V) Valine : 201720 time(s)
      • (S) Serine : 669780 time(s)
      • (P) Proline : 316920 time(s)
      • (T) Threonine : 374520 time(s)
      • (A) Alanine : 432120 time(s)
      • (Y) Tyrosine : 237660 time(s)
      • (Ochre) Stop : 124230 time(s)
      • (Amber) Stop : 127830 time(s)
      • (H) Histidine : 266460 time(s)
      • (Q) Glutamine : 280860 time(s)
      • (N) Asparagine : 295260 time(s)
      • (K) Lysine : 309660 time(s)
      • (D) Aspartic acid : 324060 time(s)
      • (E) Glutamic acid : 338460 time(s)
      • (C) Cysteine : 352860 time(s)
      • (Opal) Stop : 181830 time(s)
      • (W) Tryptophan : 185430 time(s)
      • (R) Arginine : 1202580 time(s)
      • (G) Glycine : 892920 time(s)

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• Searching [PROTEINS!] in -[ 60 ]- [DNA SECUENCES]:

  • Total [PROTEINS FOUND!]: [ 60 ]

    • [MOST-PRESENT!]: [ 30 ] time(s) is -> [ IKGLYLPR ]

      • C₆H₁₃NO₂+C₆H₁₄N₂O₂+C₂H₅NO₂+C₆H₁₃NO₂+C₉H₁₁NO₃+C₆H₁₃NO₂+C₅H₉NO₂+C₆H₁₄N₄O₂

    • [LARGEST]: [ 768 bp linear RNA ] found in [ Virus/Influenza A/Influenza A virus - New York_392_2004H3N2.genome ] is -> [ SKSRSIIFSMERIKELRNLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPSLRMKWMMAMKYPITADKRITEMVPERNEQGQTLWSKMSDAGSDRVMVSPLAVTWWNRNGPVASTVHYPKVYKTYFDKVERLKHGTFGPVHFRNQVKIRRRVDINPGHADLSAKEAQDVIMEVVFPNEVGARILTSESQLTITKEKKEELRDCKISPLMVAYMLERELVRKTRFLPVAGGTSSIYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRAAVSADPLASLLEMCHSTQIGGTRMVDILRQNPTEEQAVDICKAAMGLRISSSFSFGGFTFKRTSGSSVKKEEEVLTGNLQTLKIRVHEGYEEFTMVGKRATAILRKATRRLVQLIVSGRDEQSIAEAIIVAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIEHIDSVMGMVGVLPDMTPSTEMSMRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQRGNVLLSPEEVSETQGTERLTITYSSSMMWEINGPESVLVNTYQWIIRNWEAVKIQWSQNPAMLYNKMEFEPFQSLVPKAIRSQYSGFVRTLFQQMRDVLGTFDTTQIIKLLPFAAAPPKQSRMQFSSLTVNVRGSGMRILVRGNSPVFNYNKTTKRLTILGKDAGTLIEDPDESTSGVESAVLRGFLIIGKEDRRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRDSSILTDSQTATKRIRMAIN ]

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O₃+C₁₁H₁₂N₂O₂+C₅H₉NO₄+C₃H₇NO₂+C₅H₁₁NO₂+C₆H₁₄N₂O₂+C₆H₁₃NO₂+C₅H₁₀N₂O₃+C₁₁H₁₂N₂O₂+C₃H₇NO₃+C₅H₁₀N₂O₃+C₄H₈N₂O₃+C₅H₉NO₂+C₃H₇NO₂+C₅H₁₁NO₂S+C₆H₁₃NO₂+C₉H₁₁NO₃+C₄H₈N₂O₃+C₆H₁₄N₂O₂+C₅H₁₁NO₂S+C₅H₉NO₄+C₉H₁₁NO₂+C₅H₉NO₄+C₅H₉NO₂+C₉H₁₁NO₂+C₅H₁₀N₂O₃+C₃H₇NO₃+C₆H₁₃NO₂+C₅H₁₁NO₂+C₅H₉NO₂+C₆H₁₄N₂O₂+C₃H₇NO₂+C₆H₁₃NO₂+C₆H₁₄N₄O₂+C₃H₇NO₃+C₅H₁₀N₂O₃+C₉H₁₁NO₃+C₃H₇NO₃+C₂H₅NO₂+C₉H₁₁NO₂+C₅H₁₁NO₂+C₆H₁₄N₄O₂+C₄H₉NO₃+C₆H₁₃NO₂+C₉H₁₁NO₂+C₅H₁₀N₂O₃+C₅H₁₀N₂O₃+C₅H₁₁NO₂S+C₆H₁₄N₄O₂+C₄H₇NO₄+C₅H₁₁NO₂+C₆H₁₃NO₂+C₂H₅NO₂+C₄H₉NO₃+C₉H₁₁NO₂+C₄H₇NO₄+C₄H₉NO₃+C₄H₉NO₃+C₅H₁₀N₂O₃+C₆H₁₃NO₂+C₆H₁₃NO₂+C₆H₁₄N₂O₂+C₆H₁₃NO₂+C₆H₁₃NO₂+C₅H₉NO₂+C₉H₁₁NO₂+C₃H₇NO₂+C₃H₇NO₂+C₃H₇NO₂+C₅H₉NO₂+C₅H₉NO₂+C₆H₁₄N₂O₂+C₅H₁₀N₂O₃+C₃H₇NO₃+C₆H₁₄N₄O₂+C₅H₁₁NO₂S+C₅H₁₀N₂O₃+C₉H₁₁NO₂+C₃H₇NO₃+C₃H₇NO₃+C₆H₁₃NO₂+C₄H₉NO₃+C₅H₁₁NO₂+C₄H₈N₂O₃+C₅H₁₁NO₂+C₆H₁₄N₄O₂+C₂H₅NO₂+C₃H₇NO₃+C₂H₅NO₂+C₅H₁₁NO₂S+C₆H₁₄N₄O₂+C₆H₁₃NO₂+C₆H₁₃NO₂+C₅H₁₁NO₂+C₆H₁₄N₄O₂+C₂H₅NO₂+C₄H₈N₂O₃+C₃H₇NO₃+C₅H₉NO₂+C₅H₁₁NO₂+C₉H₁₁NO₂+C₄H₈N₂O₃+C₉H₁₁NO₃+C₄H₈N₂O₃+C₆H₁₄N₂O₂+C₄H₉NO₃+C₄H₉NO₃+C₆H₁₄N₂O₂+C₆H₁₄N₄O₂+C₆H₁₃NO₂+C₄H₉NO₃+C₆H₁₃NO₂+C₆H₁₃NO₂+C₂H₅NO₂+C₆H₁₄N₂O₂+C₄H₇NO₄+C₃H₇NO₂+C₂H₅NO₂+C₄H₉NO₃+C₆H₁₃NO₂+C₆H₁₃NO₂+C₅H₉NO₄+C₄H₇NO₄+C₅H₉NO₂+C₄H₇NO₄+C₅H₉NO₄+C₃H₇NO₃+C₄H₉NO₃+C₃H₇NO₃+C₂H₅NO₂+C₅H₁₁NO₂+C₅H₉NO₄+C₃H₇NO₃+C₃H₇NO₂+C₅H₁₁NO₂+C₆H₁₃NO₂+C₆H₁₄N₄O₂+C₂H₅NO₂+C₉H₁₁NO₂+C₆H₁₃NO₂+C₆H₁₃NO₂+C₆H₁₃NO₂+C₂H₅NO₂+C₆H₁₄N₂O₂+C₅H₉NO₄+C₄H₇NO₄+C₆H₁₄N₄O₂+C₆H₁₄N₄O₂+C₉H₁₁NO₃+C₂H₅NO₂+C₅H₉NO₂+C₃H₇NO₂+C₆H₁₃NO₂+C₃H₇NO₃+C₆H₁₃NO₂+C₄H₈N₂O₃+C₅H₉NO₄+C₆H₁₃NO₂+C₃H₇NO₃+C₄H₈N₂O₃+C₆H₁₃NO₂+C₃H₇NO₂+C₆H₁₄N₂O₂+C₂H₅NO₂+C₅H₉NO₄+C₆H₁₄N₂O₂+C₃H₇NO₂+C₄H₈N₂O₃+C₅H₁₁NO₂+C₆H₁₃NO₂+C₆H₁₃NO₂+C₂H₅NO₂+C₅H₁₀N₂O₃+C₂H₅NO₂+C₄H₇NO₄+C₅H₁₁NO₂+C₅H₁₁NO₂+C₆H₁₃NO₂+C₅H₁₁NO₂+C₅H₁₁NO₂S+C₆H₁₄N₂O₂+C₆H₁₄N₄O₂+C₆H₁₄N₂O₂+C₆H₁₄N₄O₂+C₄H₇NO₄+C₃H₇NO₃+C₃H₇NO₃+C₆H₁₃NO₂+C₆H₁₃NO₂+C₄H₉NO₃+C₄H₇NO₄+C₃H₇NO₃+C₅H₁₀N₂O₃+C₄H₉NO₃+C₃H₇NO₂+C₄H₉NO₃+C₆H₁₄N₂O₂+C₆H₁₄N₄O₂+C₆H₁₃NO₂+C₆H₁₄N₄O₂+C₅H₁₁NO₂S+C₃H₇NO₂+C₆H₁₃NO₂+C₄H₈N₂O₃

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• Searching [OPEN READING FRAMES!] in -[ 60 ]- [DNA SECUENCES]:

  • Total [OPEN READING FRAMES FOUND!]: [ 91115 ]

    • [MOST-PRESENT!]: [ 2 ] time(s) found in [ Virus/Zika/Zika.genome ] is -> [ ATG-{?}-TGA ]:

      • ATGGTGA

    • [LARGEST]: [ 1017 bp linear RNA ] found in [ Virus/West Nile/West Nile-2.genome ] is -> [ ATG-{?}-TAA ]:

      • ATGCTTACATGGTGCCAGGCTGGCAAGCGGAAGCCATGCGATCTGCCCAGCGGCGGACAGCTGCTGGCATCATGAAAAATGTAGTGGTGGATGGGATCGTGGCCACTGATGTACCTGAACTTGAACGAACAACTCCAGTCATGCAGAAAAAAGTTGGACAGATCATATTGATCTTGGTATCAATGGCCGCGGTGGTCGTCAATCCATCAGTGAGAACCGTCAGAGAGGCCGGAATTCTGACTACAGCAGCAGCAGTCACCCTATGGGAGAATGGTGCTAGTTCAGTGTGGAATGCAACGACAGCTATTGGCCTTTGTCACATCATGCGAGGAGGATGGCTCTCGTGTCTCTCCATCATGTGGACTCTCATCAAAAACATGGAGAAACCAGGCCTCAAGAGGGGTGGAGCCAAAGGACGCACGCTAGGGGAAGTTTGGAAGGAGAGACTCAACCACATGACGAAGGAAGAATTTACCAGATACAGAAAAGAAGCCATCACTGAAGTTGACCGCTCCGCAGCAAAACATGCTAGGAGAGAGGGAAACATCACTGGAGGCCACCCAGTCTCACGGGGAACCGCGAAATTACGGTGGTTAGTGGAAAGGCGTTTCCTCGAGCCAGTGGGAAAGGTTGTGGATCTCGGGTGTGGTAGAGGCGGCTGGTGCTATTACATGGCTACCCAGAAGAGGGTACAGGAAGTGAAAGGGTACACGAAAGGAGGACCTGGCCATGAAGAACCACAACTGGTGCAGAGCTATGGTTGGAATATTGTTACCATGAAGAGTGGAGTCGACGTCTTCTACAGACCATCAGAAGCGAGCGACACACTGCTCTGTGACATTGGAGAGTCATCGTCAAGTGCCGAGGTAGAAGAACACCGCACCGTCCGTGTCCTGGAGATGGTGGAAGATTGGTTGCACAGAGGACCGAAGGAATTCTGCATCAAAGTGCTATGCCCTTACATGCCCAAAGTGATTGAGAAGATGGAAACACTCCAAAGGCGATATGGAGGTGGCCTTATAA

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