I get an error when using shed-tools. This seems to occur intermittently and never repeats at the same place (when deleting the installed tools via the GUI and restarting the installation process via shed-tools).
shed-tools install -g http://127.0.0.1:8080/ -a 9da1b0b76e038a2a70e0649adb5205fa -t files/sc1galaxy-tools.yml --install_resolver_dependencies --latest --log_file logfile.txt
...
Traceback (most recent call last):
File "/remote/home/kuop/galaxy/.venv/bin/shed-tools", line 11, in <module>
sys.exit(main())
File "/remote/home/kuop/galaxy/.venv/lib/python2.7/site-packages/ephemeris/shed_tools.py", line 937, in main
install_tool_manager.install_repositories()
File "/remote/home/kuop/galaxy/.venv/lib/python2.7/site-packages/ephemeris/shed_tools.py", line 716, in install_repositories
install_repository_revision(repository, self.tsc)
File "/remote/home/kuop/galaxy/.venv/lib/python2.7/site-packages/ephemeris/shed_tools.py", line 517, in install_repository_revision
response = tool_shed_client.install_repository_revision(**repository)
File "/remote/home/kuop/galaxy/.venv/lib/python2.7/site-packages/bioblend/galaxy/toolshed/__init__.py", line 146, in install_repository_revision
return self._post(url=url, payload=payload)
File "/remote/home/kuop/galaxy/.venv/lib/python2.7/site-packages/bioblend/galaxy/client.py", line 160, in _post
files_attached=files_attached)
File "/remote/home/kuop/galaxy/.venv/lib/python2.7/site-packages/bioblend/galaxyclient.py", line 137, in make_post_request
timeout=self.timeout)
File "/remote/home/kuop/galaxy/.venv/lib/python2.7/site-packages/requests/api.py", line 112, in post
return request('post', url, data=data, json=json, **kwargs)
File "/remote/home/kuop/galaxy/.venv/lib/python2.7/site-packages/requests/api.py", line 58, in request
return session.request(method=method, url=url, **kwargs)
File "/remote/home/kuop/galaxy/.venv/lib/python2.7/site-packages/requests/sessions.py", line 508, in request
resp = self.send(prep, **send_kwargs)
File "/remote/home/kuop/galaxy/.venv/lib/python2.7/site-packages/requests/sessions.py", line 618, in send
r = adapter.send(request, **kwargs)
File "/remote/home/kuop/galaxy/.venv/lib/python2.7/site-packages/requests/adapters.py", line 490, in send
raise ConnectionError(err, request=request)
requests.exceptions.ConnectionError: ('Connection aborted.', BadStatusLine("''",))