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Name: GenePattern
Type: Organization
Bio: A Platform for Reproducible Bioinformatics
Twitter: genepattern
Location: San Diego, CA
Blog: http://genepattern.org/
Name: GenePattern
Type: Organization
Bio: A Platform for Reproducible Bioinformatics
Twitter: genepattern
Location: San Diego, CA
Blog: http://genepattern.org/
Archive of old Cufflinks modules
Edwin Juarez's support library for GenePattern
Disease Association Protein-Protein Link Evaluator (Broad hosted algorithm)
A Differential Expression workflow for RNA-Seq data based on the DESeq2 package from Bioconductor
Demo wrapper module for the DESeq2 R package
This module will turn a TXT file into ComparativeMarkerSelectionViewer-compatible ODF file
These are some modalities for differential expression analysis.
Visualizes the results of ComparativeMarkerSelection
GenePattern module to perform differential expression using Pearson correlation or information coefficient.
GP module for comparing test results with known good files.
GenePattern Module which implements the DiSCoVER algorithm
Docker container and module wrapper for Amaretto from the Gavaert Lab at Stanford (http://med.stanford.edu/gevaertlab/software.html)
common scripts for docker/aws batch containers used for GenePattern modules
GenePattern docker container for the download from gdc module
Docker container for GISTIC 2.0.23
Docker container for hisat2 module
Docker container for java 18 (orackle jdk)
GenePattern container for MutSigCV module on docker and/or AWS Batch
Docker container for OpenJDK 11 on GenePattern, extending from the AdoptOpenJDK base Dockerfile.
Perl 5.20 container for GenePattern modules on Docker and/or AWS Batch
Python 3.6.2 docker container for GenePattern modules running on AWSBatch
Python 3.7 docker container for GenePattern modules running on AWSBatch
genepattern docker/aws batch container for R2.10 modules
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Open source projects and samples from Microsoft.
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Data-Driven Documents codes.
China tencent open source team.