genepattern Goto Github PK
Name: GenePattern
Type: Organization
Bio: A Platform for Reproducible Bioinformatics
Twitter: genepattern
Location: San Diego, CA
Blog: http://genepattern.org/
Name: GenePattern
Type: Organization
Bio: A Platform for Reproducible Bioinformatics
Twitter: genepattern
Location: San Diego, CA
Blog: http://genepattern.org/
The GenePattern Server web application
A collection of Python utility functions for use with GenePattern
Imports data from the Gene Expression Omnibus (GEO)
Genomic Identification of Significant Targets in Cancer
Using this repo to figure out how to work with github actions
A GenePattern JobRunner for GridEngine integration.
A standard template repository for creating GenePattern Notebook based analyses.
Temporary repository, for testing sparse checkout from private broadinstitute/genepattern into new public repo
landing page to redirect users from genepattern.broadinstitute.org to cloud.genepattern.org
an archive of gparc module docs as of 21.12.09
Sign in to JupyterHub using your GenePattern credentials
GenePattern Cloud Server Usage Report
GenePattern Notebook Website (old)
Module for GSEA Julia Implementation
Leading Edge Viewer for GSEA results
A probabilistic method to interpret bi-allelic marker data in cancer samples.
Wrapper Script for Harmony designed to work with GenePattern Module Integrator
Creates a heat map from a dataset
A configurable heat map viewer that provides users with several options for manipulating and visualizing array-based data
GenePattern Hierarchical Clustering module.
Creates an image of the dendrogram generated from HierarchicalClustering
Views results of hierarchical clustering.
Python rewrite of the hierarchical clustering module.
Repo for the dockerized HISAT2.aligner module
Repo for the HISAT2 .ndexer module which creates indices for the HISAT2.aligner module
HTSeq (0.11.2) wrapper module: Counting reads in features with 'htseq-count'
Launches IGV JS with input file(s)
GenePattern module wrapping igv.js
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.