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.dotfiles

Dotfiles for bash, vim, tmux, etc.

2016_08_02_rioolympicsathletes

init

ad_finemap

Code supporting analyses in paper on fine-mapping AD loci

advanced-shiny

Shiny tips & tricks for improving your apps and solving common problems

algorithms_and_data_structures

180+ Algorithm & Data Structure Problems using C++

analysis_pipeline

TOPMed analysis pipeline

anndata

Annotated data.

annopred

Genetic risk prediction integrating LD and functional annotations

applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2017

asmc

Ascertained Sequentially Markovian Coalescent

avengeme

Additive Variance Explained and Number of Genetic Effects Method of Estimation

awesome-cpp

A curated list of awesome C/C++ frameworks, libraries, resources, and shiny things. Inspired by awesome-... stuff.

awesome-multitrait-gwas

List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS

awesome-r

A curated list of awesome R frameworks, packages and software.

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

badgers

bcbiornaseq

Quality control and differential expression for bcbio RNA-seq experiments.

beginning-cpp-programming

Beginning C++ Programming, by Packt

bfgwas

single class model

bgdata

A Suite of Packages for Analysis of Big Genomic Data

bgwas

R package to perform Bayesian Genome-Wide Association Studies

big_summer_2017

a repository for storing scripts for the big summer

biobankphenotypes

biotools

A list of useful bioinformatics resources

boxplotr.shiny

shiny application to generate box plots with R

bsda

R package for "Basic Statistics and Data Analysis" web page: https://alanarnholt.github.io/BSDA/

burden_testing

A collection of scripts to run genome-wide burden testing using MONSTER.

caviar

classifierplots

Generates a visualization of binary classifier performance as a grid of diagonstic plots with just one function call

cnv-ukb

Code repository for "Phenome-wide burden of copy number variation in UK Biobank" (bioRxiv:545996)