globalbioticinteractions/arthropodeasycaptureamnh

Points to RSS feed of Arthropod Easy Capture RSS feed of the American Museum of Natural History (AMNH). At time of writing (Jan 2016), the RSS feed included links to projects like Digital Bee Collection Network, Tri-trophic Thematic Collection Network and Plant Bug Planetary Biodiversity Inventory Project . By pointing to the RSS feed, http://globalbioticinteractions.org can access the latest versions of darwin core archives made available through the feed.

Welcome to Global Biotic Interactions (GloBI)

The mission of this project is to find efficient ways to normalize and integrate species interaction data to enable researchers and enthusiasts to answer questions like: Which species does an Angel Shark ( Squatina squatina ) eat in the Gulf of Mexico?

Please see https://globalbioticinteractions.org or https://github.com/globalbioticinteractions/globalbioticinteractions/wiki for more information.

Citing GloBI

Poelen, J. H., Simons, J. D., & Mungall, C. J. (2014). Global Biotic Interactions: An open infrastructure to share and analyze species-interaction datasets. Ecological Informatics, 24, 148–159. doi:10.1016/j.ecoinf.2014.08.005

Licenses

Unless otherwise noted, source code is released under GLPv3 and data is available under Creative Commons Attribution 4.0 International License. We are trying to do the best we can to ensure that the references to the original data sources are preserved and attributed. If you feel that there are better ways to do this, please let us know.

arthropodeasycaptureamnh's Issues

RSS feed not available, uploaded zip file

The RSS feed for this collection is no longer available so I uploaded the zip file. It is static and will not change. @jhpoelen do you have suggestions on how to best make this information available?

blank source taxon names found

from https://travis-ci.org/globalbioticinteractions/arthropodEasyCaptureAMNH/builds/190701573

2017-01-10 18:25:05,654 [main] WARN  org.eol.globi.tool.GitHubRepoCheck - [globalbioticinteractions/arthropodEasyCaptureAMNH]: [found blank source taxon name on line [64186]]
2017-01-10 18:25:05,654 [main] WARN  org.eol.globi.tool.GitHubRepoCheck - [globalbioticinteractions/arthropodEasyCaptureAMNH]: [found blank source taxon name on line [64187]]
2017-01-10 18:25:05,654 [main] WARN  org.eol.globi.tool.GitHubRepoCheck - [globalbioticinteractions/arthropodEasyCaptureAMNH]: [found blank source taxon name on line [64188]]
2017-01-10 18:25:05,654 [main] WARN  org.eol.globi.tool.GitHubRepoCheck - 

empty event date fields found

from https://travis-ci.org/globalbioticinteractions/arthropodEasyCaptureAMNH/builds/190701573

..2017-01-10 18:25:05,753 [main] WARN  org.eol.globi.tool.GitHubRepoCheck - [globalbioticinteractions/arthropodEasyCaptureAMNH]: [found suspicious event date [] on line [68942]]
2017-01-10 18:25:05,753 [main] WARN  org.eol.globi.tool.GitHubRepoCheck - [globalbioticinteractions/arthropodEasyCaptureAMNH]: [found suspicious event date [] on line [68943]]
2017-01-10 18:25:05,753 [main] WARN  org.eol.globi.tool.GitHubRepoCheck - 

Data review January 11, 2021

A review of the data contained within this repository.

1. Data provider citation only cites the entry point (rss feed) and does not cite the dataset the records were retrieved. The specimen also not cited for each interaction as referenced in #3

2. Blank source taxon names are found: #2

3. Interaction type from not understood by GloBI.

4. Suspected truncation of taxon names/. Example is https://www.globalbioticinteractions.org/?interactionType=interactsWith&sourceTaxon=Megandrena%20mentzeliae and the record is below. Also, Mentzelia tricuspis is also a species according to catalogOfLife : https://www.gbif.org/species/170812911

idigbio:recordID	dcterms:modified	institutionCode	ownerInstitutionCode	basisOfRecord	datasetName	datasetID	dcterms:references	occurrenceID	catalogNumber	recordedBy	individualCount	sex	lifeStage	associatedTaxa	otherCatalogNumbers	samplingProtocol	eventDate	year	verbatimEventDate	habitat	eventID	country	stateProvince	county	locality	decimalLatitude	decimalLongitude	coordinateUncertaintyInMeters	georeferenceRemarks	locationAccordingTo	verbatimElevation	typeStatus	identifiedBy	dateIdentified	previousIdentifications	higherClassification	scientificName	family	genus	subgenus	specificEpithet	infraspecificEpithet	scientificNameAuthorship
urn:uuid:8245f83c-d8e1-11e2-99a2-0026552be7ea_RID	2005-10-27	AMNH	American Museum of Natural History	PreservedSpecimen	Collaborative databasing of North American bee collections within a global informatics network project	urn:uuid:13674fa4-8611-11e4-8259-0026552be7ea	Digital Bee Collections Network, 2014 (and updates). Version: 2016-01-11. National Science Foundation grant DBI 0956388	urn:uuid:8245f83c-d8e1-11e2-99a2-0026552be7ea	AMNH_BEE 00000001	T. J. Zavortink	1	Female	Adult	associated with:Mentzelia tricuspis		Netting	1969-05-15	1969				UNITED STATES	Nevada	Clark	Foothills of Spring Mountains, NW of Las Vegas, Lone Mt. Rd., 5.5 mi W of US Hwy 95	36.21000	-115.70000			GeoLocate Software		Paratype	T. J. Zavortink	1972		Animalia;Arthropoda;Andrenidae;Andreninae;Andrenini	Megandrena mentzeliae	Andrenidae	Megandrena		mentzeliae		Zavortink,1972
urn:uuid:8245f8c8-d8e1-11e2-99a2-0026552be7ea_RID	2005-10-27	AMNH	American Museum of Natural History	PreservedSpecimen	Collaborative databasing of North American bee collections within a global informatics network project	urn:uuid:13674fa4-8611-11e4-8259-0026552be7ea	Digital Bee Collections Network, 2014 (and updates). Version: 2016-01-11. National Science Foundation grant DBI 0956388	urn:uuid:8245f8c8-d8e1-11e2-99a2-0026552be7ea	AMNH_BEE 00000002	T. J. Zavortink	1	Male	Adult	associated with:Mentzelia tricuspis		Netting	1969-05-15	1969				UNITED STATES	Nevada	Clark	Foothills of Spring Mountains, NW of Las Vegas, Lone Mt. Rd., 5.5 mi W of US Hwy 95	36.21000	-115.70000			GeoLocate Software		Paratype	T. J. Zavortink	1972		Animalia;Arthropoda;Andrenidae;Andreninae;Andrenini	Megandrena mentzeliae	Andrenidae	Megandrena		mentzeliae		Zavortink,1972
urn:uuid:8245f95e-d8e1-11e2-99a2-0026552be7ea_RID	2005-10-27	AMNH	American Museum of Natural History	PreservedSpecimen	Collaborative databasing of North American bee collections within a global informatics network project	urn:uuid:13674fa4-8611-11e4-8259-0026552be7ea	Digital Bee Collections Network, 2014 (and updates). Version: 2016-01-11. National Science Foundation grant DBI 0956388	urn:uuid:8245f95e-d8e1-11e2-99a2-0026552be7ea	AMNH_BEE 00000003	T. J. Zavortink	1	Male	Adult	associated with:Mentzelia tricuspis		Netting	1969-05-15	1969				UNITED STATES	Nevada	Clark	Foothills of Spring Mountains, NW of Las Vegas, Lone Mt. Rd., 5.5 mi W of US Hwy 95	36.21000	-115.70000			GeoLocate Software		Paratype	T. J. Zavortink	1972		Animalia;Arthropoda;Andrenidae;Andreninae;Andrenini	Megandrena mentzeliae	Andrenidae	Megandrena		mentzeliae		Zavortink,1972

Data provider citation

@jhpoelen Data provider citation only cites the entry point (rss feed) and does not cite the dataset the records were retrieved. The specimen is also not cited for each interaction in this dataset.

missing data for Tri-trophic dataset

Hi @seltmann -

I just stumbled across this index configuration and noticed that is was disabled some months ago.

Can you refresh my memory on what our plan was with this valuables collection of records from the Tri-Trophic TCN ?

Thanks!