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Welcome to Global Biotic Interactions (GloBI)

The mission of this project is to find efficient ways to normalize and integrate species interaction data to enable researchers and enthusiasts to answer questions like: Which species does an Angel Shark ( Squatina squatina ) eat in the Gulf of Mexico?

Please see https://globalbioticinteractions.org or https://github.com/globalbioticinteractions/globalbioticinteractions/wiki for more information.

Java CI DOI

Citing GloBI

Poelen, J. H., Simons, J. D., & Mungall, C. J. (2014). Global Biotic Interactions: An open infrastructure to share and analyze species-interaction datasets. Ecological Informatics, 24, 148–159. doi:10.1016/j.ecoinf.2014.08.005

Licenses

gplv3cc-by-nc

Unless otherwise noted, source code is released under GLPv3 and data is available under Creative Commons Attribution 4.0 International License. We are trying to do the best we can to ensure that the references to the original data sources are preserved and attributed. If you feel that there are better ways to do this, please let us know.

globalbioticinteractions's Projects

africatreedatabase icon africatreedatabase

Seltzer, Carrie; Wysocki, William; Palacios, Melissa; Eickhoff, Anna; Pilla, Hannah; Aungst, Jordan; Mercer, Aaron; Quicho, Jamie; Voss, Neil; Xu, Man; J. Ndangalasi, Henry; C. Lovett, Jon; J. Cordeiro, Norbert (2015): Plant-animal interactions from Africa. figshare. https://dx.doi.org/10.6084/m9.figshare.1526128 . To be included in http://globalbioticinteractions.org .

aps icon aps

Common Names of Plant Diseases by the American Phytopathological Society

aps-turfgrasses icon aps-turfgrasses

turfgrass diseases semi-automatically extracted from http://www.apsnet.org/publications/commonnames/Pages/Turfgrasses.aspx

arthropodeasycaptureamnh icon arthropodeasycaptureamnh

Points to RSS feed of Arthropod Easy Capture RSS feed of the American Museum of Natural History (AMNH). At time of writing (Jan 2016), the RSS feed included links to projects like Digital Bee Collection Network, Tri-trophic Thematic Collection Network and Plant Bug Planetary Biodiversity Inventory Project . By pointing to the RSS feed, http://globalbioticinteractions.org can access the latest versions of darwin core archives made available through the feed.

austin2021 icon austin2021

GloBI configuration to index Austen, J. M., & Barbosa, A. D. (2021). Diversity and epidemiology of bat trypanosomes: a one health perspective. Pathogens, 10(9), 1148. doi:10.3390/pathogens10091148

barnes icon barnes

Dataset extracted from Barnes 2008

batbase icon batbase

configuration to index Geiselman, Cullen K. & Sarah Younger. 2020. Bat Eco-Interactions Database. www.batbase.org

batley2018 icon batley2018

Configuration to help Global Biotic Interactions (GloBI, https://globalbioticinteractions.org) index: Batley, Michael (2018): Flower-visiting records for Australian native bees. figshare. Collection. https://doi.org/10.6084/m9.figshare.c.3521328.v4

batplant icon batplant

GloBI configuration for indexing https://batplant.org

bco-dmo icon bco-dmo

Configuration to help Global Biotic Interactions (GloBI, https://globalbioticinteractions.org) index datasets via the Biological & Chemical Oceanography Data Management Office https://www.bco-dmo.org/ at the Woods Hole Oceanographic Institution http://www.whoi.edu/

becker2020 icon becker2020

GloBI configuration to help index associations used in Daniel Becker, Gregory F Albery, Anna R Sjodin, Timothee Poisot, Tad Dallas, Evan A. Eskew, Maxwell J. Farrell, Sarah Guth, Barbara A Han, Nancy B Simmons, Colin J Carlson. 2020. Predicting wildlife hosts of betacoronaviruses for SARS-CoV-2 sampling prioritization. bioRxiv 2020.05.22.111344; doi: https://doi.org/10.1101/2020.05.22.111344

bell icon bell

Dataset extracted from Bell 2015

bello2017 icon bello2017

Bello, C., Galetti, M., Montan, D., Pizo, M. A., Mariguela, T. C., Culot, L., Bufalo, F., Labecca, F., Pedrosa, F., Constantini, R., Emer, C., Silva, W. R., da Silva, F. R., Ovaskainen, O. and Jordano, P. (2017), Atlantic frugivory: a plant–frugivore interaction data set for the Atlantic Forest. Ecology, 98: 1729. doi:10.1002/ecy.1818

bioinfo icon bioinfo

Food Webs and Species Interactions in the Biodiversity of UK and Ireland

bold icon bold

GloBI configuration to index Ratnasingham, S., & Hebert, P. D. N. (2007, January 24). BARCODING: bold: The Barcode of Life Data System (http://www.barcodinglife.org). Molecular Ecology Notes. Wiley-Blackwell. http://doi.org/10.1111/j.1471-8286.2007.01678.x Ratnasingham, S., & Hebert, P. D. N. (2013, July 8). A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System. (D. Fontaneto, Ed.) PLoS ONE. Public Library of Science (PLoS). http://doi.org/10.1371/journal.pone.0066213

bourlat2023 icon bourlat2023

configuration for GloBI to index: Bourlat SJ, Koch M, Kirse A, Langen K, Espeland M, Giebner H, Decher J, Ssymank A, Fonseca VG (2023) Metabarcoding dietary analysis in the insectivorous bat Nyctalus leisleri and implications for conservation. Biodiversity Data Journal 11: e111146. https://doi.org/10.3897/BDJ.11.e111146

brose icon brose

Dataset extracted from Brose 2005

brose-gateway icon brose-gateway

configuration for GloBI to index Brose, U. (2018). GlobAL daTabasE of traits and food Web Architecture (GATEWAy) version 1.0 [Data set]. German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig. https://doi.org/10.25829/IDIV.283-3-756

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