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Welcome to Global Biotic Interactions (GloBI)

The mission of this project is to find efficient ways to normalize and integrate species interaction data to enable researchers and enthusiasts to answer questions like: Which species does an Angel Shark ( Squatina squatina ) eat in the Gulf of Mexico?

Please see https://globalbioticinteractions.org or https://github.com/globalbioticinteractions/globalbioticinteractions/wiki for more information.

Java CI DOI

Citing GloBI

Poelen, J. H., Simons, J. D., & Mungall, C. J. (2014). Global Biotic Interactions: An open infrastructure to share and analyze species-interaction datasets. Ecological Informatics, 24, 148–159. doi:10.1016/j.ecoinf.2014.08.005

Licenses

gplv3cc-by-nc

Unless otherwise noted, source code is released under GLPv3 and data is available under Creative Commons Attribution 4.0 International License. We are trying to do the best we can to ensure that the references to the original data sources are preserved and attributed. If you feel that there are better ways to do this, please let us know.

globalbioticinteractions's Projects

ummzi icon ummzi

Configuration for indexing species interactions in collections of University of Michigan Museum of Zoology Insect Division

unhc icon unhc

Configuration to help index University of New Hampshire Collection of Insects and other Arthropods by Global Biotic Interactions

usgs-bison icon usgs-bison

Configuration for GloBI to index USGS Biodiversity Information Serving Our Nation (BISON) IPT

usgs-pollinator-library icon usgs-pollinator-library

Configuration to help Global Biotic Interactions (GloBI, https://globalbioticinteractions.org) index the United States Geological Survey (USGS) Pollinator Library. https://www.npwrc.usgs.gov/pollinator.

usnm icon usnm

Configuration for GloBI to index collections of the National Museum of Natural History, Smithsonian Institution

usnm-ixodes icon usnm-ixodes

GloBI configuration to index Ixodes Records from US National Museum of Natural History

utah-piper icon utah-piper

Configuration to help make the records in Price Institute of Parasite Research, School of Biological Sciences, University of Utah Collection available through Global Biotic Interactions (GloBI, https://globalbioticinteractions.org).

vertnet icon vertnet

GloBI-enabled configuration for VertNet.org

virion icon virion

GloBI configuration to index "The Global Virome in One Network (VIRION): an atlas of vertebrate-virus associations"

virus-host-db icon virus-host-db

Mihara, T., Nishimura, Y., Shimizu, Y., Nishiyama, H., Yoshikawa, G., Uehara, H., Hingamp, P., Goto, S., and Ogata, H.; Linking virus genomes with host taxonomy. Viruses 8, 66 doi:10.3390/v8030066 (2016).

wardeh2021 icon wardeh2021

GloBI config to index Wardeh, M., Baylis, M. & Blagrove, M.S.C. Predicting mammalian hosts in which novel coronaviruses can be generated. Nat Commun 12, 780 (2021). https://doi.org/10.1038/s41467-021-21034-5

wis-ih-wirc icon wis-ih-wirc

GloBI configuration for indexing WIRC / University of Wisconsin Madison WIS-IH / Wisconsin Insect Research Collection

wood2015 icon wood2015

Discover data in Wood SA, Russell R, Hanson D, Williams RJ, Dunne JA (2015) Data from: Effects of spatial scale of sampling on food web structure. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.g1qr6

yale-peabody icon yale-peabody

GloBI configuration for indexing collections of Yale University Peabody Museum

ysu-bc icon ysu-bc

configuration to help Global Biotic Interactions (GloBI, http://globalbioticinteractions.org) find and index biotic association records of the Yugra State University Biological Collection (YSU BC) https://www.gbif.org/dataset/search?hosting_org=fa46e267-4d25-41f5-bbbe-1cd75860b943 via http://ipt.ugrasu.ru:8080/ipt/about.do .

zander2011 icon zander2011

Discover interaction data in C. Dieter Zander, Neri Josten, Kim C. Detloff, Robert Poulin, John P. McLaughlin, and David W. Thieltges. 2011. Food web including metazoan parasites for a brackish shallow water ecosystem in Germany and Denmark. Ecology 92:2007.

zenodo-metadata icon zenodo-metadata

This repository contains configuration for GloBI to help index Zenodo publications with species interaction annotations.

zover icon zover

GloBI configuration to index Siyu Zhou, Bo Liu, Yelin Han, Yuyang Wang, Lihong Chen, Zhiqiang Wu, Jian Yang, ZOVER: the database of zoonotic and vector-borne viruses, Nucleic Acids Research, 2021;, gkab862, https://doi.org/10.1093/nar/gkab862

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