globalbioticinteractions/ummzi

Configuration for indexing species interactions in collections of University of Michigan Museum of Zoology Insect Division

This repository has been deprecated and archived.

Please use https://github.com/EMTuckerLabUMMZ/ummzi instead.

Configuration to help make the parasite-host records in collection of the University of Michigan Museum of Zoology Division of Insects available through Global Biotic Interactions (GloBI, https://globalbioticinteractions.org).

Data provided by Erika Tucker and Barry Oconner of the University of Michigan Museum of Zoology Division of Insects (UMMZI). For more information and citation examples, see https://www.globalbioticinteractions.org/parasitetracker#UMMZ and https://www.gbif.org/dataset/13e7869e-0c76-473a-a227-53d6e3d6fbf2 and https://doi.org/10.15468/tmxd7n and https://ipt.lsa.umich.edu/resource?r=ummz_insects and https://scan-bugs.org/portal/collections/misc/collprofiles.php?collid=221 . See also globalbioticinteractions/globalbioticinteractions#452 .

ummzi's Issues

Data review questions November 13, 2020

@jhpoelen @seltmann reviewed this dataset on November 13, 2020. Questions from this review include:

1. 11448 source taxon names are null. Many of these also include a target taxon name that is null and the only data is a uuid for the record. Does this make sense and do you expect skeleton records to exist in the dataset?

2. When will the data be updated? Currently, we have a snapshot from January 21, 2020.

3. All interactions are hasHost and they are mapped to http://purl.obolibrary.org/obo/RO_0002454

A full review is found at https://www.globalbioticinteractions.org/parasitetracker:

Review of [globalbioticinteractions/ummzi] included:

• 67819 interaction(s)
• 340820 note(s)
• 67819 info(s)
  [globalbioticinteractions/ummzi] has 340820 reviewer note(s):
  317711 target taxon name missing
  11448 source taxon name missing: using institutionCode/collectionCode/collectionId/catalogNumber/occurrenceId as placeholder
  11448 source taxon name missing
  213 target taxon name missing: using institutionCode/collectionCode/collectionId/catalogNumber/occurrenceId as placeholder

Uploads disabled?

I was trying to upload a new/replacement dataset dump, but when I click "upload file" I get the message ""Uploads are disabled. File uploads require push access to this repository."

UMMZI-full-database-export.csv.gz