Comments (1)
Hey Max,
Thanks for your suggestion!
I've implemented a preliminary rest api for accessing results similar to the denormalized json format that you suggested. Still have to add the taxon ids and taxon path, so that its easy to retrieve images and other info like common names from other apis like http://eol.org/api . I figured that a query style might be nicer than dumping > 40MB of json into a file ;) with the additional advantage of being able to query for specific interactions, taxa and locations. Let me know if you'd prefer the huge json file regardless. . .
Curious to hear your thoughts . . . and let me know if you have any ideas on how to visualize or otherwise use GloBI interaction data . . .
thx,
-jorrit
Some examples:
Shows all observations of predators of brown shrimp (Farfantepenaeus aztecus) in Gulf of Mexico (area bounded by north-west lat/lng 29.3/-97.0 and south-east lat/lng 26.3/96.1):
http://trophicgraph.com:8080/taxon/Farfantepenaeus%20aztecus/preyedUponBy?nw_lat=29.3&nw_lng=-97.0&se_lat=26.3&se_lng=96.1&includeObservations=true&type=json.v2
Show all observations of humans (Homo sapiens) preying haddock (Melanogrammus aeglefinus):
http://trophicgraph.com:8080/taxon/Homo%20sapiens/preysOn/Melanogrammus%20aeglefinus?includeObservations=true&type=json.v2
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Related Issues (20)
- Butterflyfish interaction data HOT 10
- Thamnophis Dietary Recodr- Update HOT 1
- suggest to turn issues button green instead of yellow HOT 1
- identify a use-case for Cross Domain Interoperability Framework integration to help increase searchability of GloBI indexed datasets HOT 5
- Browser links to multiple wrong external identifiers for taxon "Candidatus Endoriftia persephone" HOT 8
- Taxon name "Giant Tube Worm (Riftia pachyptila)" is not being suggested by query interface HOT 6
- encyclopedia of life page contains "Missing page" when linking to GloBI indexed species interaction records. HOT 2
- suggest to index virjendb https://virjendb.uni-jena.de/Downloads HOT 3
- suggest to index Zapata-Mesa, Natalya, Sebastián Montoya-Bustamante, Juliana Hoyos, Daniela Peña, Jorge Galindo-González, Julio J. Chacón-Pacheco, Jesús Ballesteros-Correa, et al. 2024. “ BatFly: A Database of Neotropical Bat–Fly Interactions.” Ecology 105(3): e4249. https://doi.org/10.1002/ecy.4249 HOT 2
- protect repo against GitHub Action Worms HOT 2
- let wikidata index WP10.3 Agricultural Biodiversity through their authors and associated pollination claims HOT 1
- show example of how WP10.3 pilot study contributes to the Encyclopedia of Life HOT 4
- suggest to index https://phdaily.info/
- suggest to index https://viralhostrangedb.pasteur.cloud
- suggest to index Moonen et al 2023 One Health: https://doi.org/10.1016/j.onehlt.2023.100490
- GloBI API server appears to be down HOT 4
- suggest to index Fetters, Andrea M., and Tia-Lynn Ashman. 2023. The pollen virome: a review of pollen-associated viruses and consequences for plants and their interactions with pollinators. American Journal of Botany 110(6): e16144. https://doi.org/10.1002/ajb2.16144
- announcement: 2024-04-18 WorldFAIR webinar series- "Reusing Plant-Pollinator Datasets: a Global Perspective with Guidelines and Recommendations inspired by Pilot Studies from Africa, the Americas and Europe".
- suggest to index Adhurya, S., Lee, D.-Y., & Park, Y.-S. (2024). KF-metaweb: A trophic metaweb of freshwater ecosystems of South Korea. Global Ecology and Biogeography, 00, e13845. https://doi.org/10.1111/geb.13845
- suggest to index the USDA PLANTS database
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