globalbioticinteractions/globalbioticinteractions

Global Biotic Interactions provides access to existing species interaction datasets

Welcome to Global Biotic Interactions (GloBI)

The mission of this project is to find efficient ways to normalize and integrate species interaction data to enable researchers and enthusiasts to answer questions like: Which species does an Angel Shark ( Squatina squatina ) eat in the Gulf of Mexico?

Please see https://globalbioticinteractions.org or https://github.com/globalbioticinteractions/globalbioticinteractions/wiki for more information.

Citing GloBI

Poelen, J. H., Simons, J. D., & Mungall, C. J. (2014). Global Biotic Interactions: An open infrastructure to share and analyze species-interaction datasets. Ecological Informatics, 24, 148–159. doi:10.1016/j.ecoinf.2014.08.005

Licenses

Unless otherwise noted, source code is released under GLPv3 and data is available under Creative Commons Attribution 4.0 International License. We are trying to do the best we can to ensure that the references to the original data sources are preserved and attributed. If you feel that there are better ways to do this, please let us know.

globalbioticinteractions's Issues

possible to search by genus?

I watched a documentary on blue fin tuna, but there are 3 different species: atlantic, southern and pacific

They all are in genus Thunnus, and I was wondering if you could query interaction data by genus

findCloseMatchesForTaxon returns in 15 items at maximum

findCloseMatchesForTaxon seems to limit the count of returned result items to 15.

Example:
http://trophicgraph.com:8080/findCloseMatchesForTaxon/h
returns 15 items but e.g. 'homo sapiens" is missed

Maybe there is a kind of paging involved during querying the database.

Summary data please

For data consumers who want only one record (or a very few) between any two taxa, let us have a summary dataset, please. As a first cut, within each contributed dataset, one summary record per taxon or per association. Let's see, minutiae: if a pair of associates has multiple different association types between them, these should be kept separate, so one record per unique triple of taxon-associationtype-taxon. Any metadata attached to occurrence or association which varies among records would be lost, but any that is uniform among all summarized records- it would be great if this could be preserved. eg: attribution data- occasionally maybe also location/date context?

Review existing data model

See attached image for a coarse description of the existing species interaction data model.

Possible improvements include: interaction type modeling (directionality, type hierarchy, interaction type "taxonomy"), taxon classification modeling, attribution, study vs dataset vs summary.

consider using GADM (Global Administrative Areas Boundaries without limits) for geo admin shapes

http://gadm.org/version2

fix link to ontology on wiki

taxon path (all taxon ranks) for "Foraminifera" does not include "Foraminifera" but synonym "Foraminiferida"

Steps to reproduce:

1. search for predator / prey of "Foraminifera" by taxon name
2. taxon EOL:4888 is returned
3. search for predator / prey of "Foraminifera" by taxon path

Expected result:
taxon EOL:4888 is returned

Actual result:
taxon EOL:4888 is not returned, because the taxon path (full taxonomic path) of "Foraminifera" did not include "Foraminifera", but was "Protozoa Not Granuloreticulosea Foraminiferida". Since all queries are done by taxonomic path or parts, the synonym "Foraminiferida" does not match.

normalize locations such that administrative areas (e.g. country) and coordinates (lat /lng) can be accessed

As suggested by @csparr

Use case:

1. data set contains adminstrative geo information such as country, county, city
2. GloBI ingests geo information and normalizes it into a geo-coding ontology / vocabulary
3. With the normalized geocodes, GloBI users can select areas of interest based on coordinates (latitude, longitude) and/or administrative areas (e.g. find me all mammals that are eaten in New York City, NY, USA).

A coding scheme that looks somewhat useful is http://geonames.org . Please chime in if you know of a better way to express geo data to capture both coordinates and administrative areas.

Introduce a way to find taxon link to FishBase

Suggested by @jsimons9 :

Introduce a way to lookup and link to FishBase taxonomy pages.

http://fishbase.org

map existing life stage, body part and physiological state to UBERON ontology

Currently, GloBI has a mapping file that internally normalizes terms. Rather than using GloBI terms, we'd like to use an existing ontology such as UBERON to avoid re-inventing the wheel.

The mapping current mapping file for life stage, body part and physiological state can be found here:
https://raw.github.com/jhpoelen/eol-globi-data/master/eol-globi-data-tool/src/main/resources/org/eol/globi/service/globi-uberon-mapping.txt

@cmungall I've tried to mimic the spire to envo mapping. please let me know if this works for you.

@jsimons9 the mapping above can serve as the controlled list for now. Only items on this list should/ can be used for adding new data. If there's missing items, please feel free to add terms in same format. Please note that the file is tab separated. Apparently tab separation is quite popular in the bio informatics world.

introduce a way to answer the question: "what does a ... eat in ... ecoregion?"

More specifically, we'd like to answer the questions: which taxa are known to be eaten by king mackerel for the Floridian, North Gulf of Mexico, South Gulf of Mexico.

denormalized json export

e.g.

{
  "interaction": [
    {
      "study": "mcdonalds19239282"
      "location": {},
      "time": "234342342",

      "source": {
        "taxon": {
          name: "Homo sapiens",
          id: 5,
          path: '...'
        },
      },
      "target": {
        name: "Homo sapiens",
        id: 5,
        path: '...'
      },
      "type": "ate"
    }
  ]
}

find shapefiles for Large Marine Ecosystems (LME).

MEOW (Marine Ecosystems of the World) seems to cover mostly continental shelf, not deep sea. It would be nice to incorporate a way to classify locations beyond the continental shelf.

integrate with Atlas of Living Australia's species interaction

Reference shared by Cyndy Parr:

http://ala1.science.unsw.edu.au/

findCloseMatchesForTaxon results differ for search term length

If you request for #findCloseMatchesForTaxon the results are not as expected for different count of characters of a given search term:

Example:
http://trophicgraph.com:8080/findCloseMatchesForTaxon/homo%20s
result does not contain any entry with 'homo s'

http://trophicgraph.com:8080/findCloseMatchesForTaxon/homo%20sap
rest urns an empty result set

http://trophicgraph.com:8080/findCloseMatchesForTaxon/homo%20sapi
returns a set with the 'homo sapiens' item

provide mapping from CMECS to ENVO

from communication with @jsimons9

Hi Jorrit,

  Thanks for the info about ENVO.  I have been using CMECS (Coastal and Marine Ecological Classification Standard) for our habitat info in GoMexSI, which uses Spalding et al for its marine ecoregion classifications (see attached documents).  I did some searching at the ENVO site but was unable to figure out exactly how to use it.  CMECS is quite detailed, and I am curious as to how or if it meshes with ENVO.  Hopefully these are compatible or complementary efforts.

  Let me know what are your thoughts on CMECS.

Thanks,

Jim

http://www.csc.noaa.gov/digitalcoast/publications/cmecs

retrieving results of many prey items takes long time

Steps to reproduce:

1. go to http://eol-globi.github.com
2. enter "fish", and select "Actinopterygii"

Expected results: first bunch of results show up immediately, the rest is loaded when needed.

Actual results: all prey items are retrieved at once, resulting is long loading time of the results.

Suggestion: introduce pagination to progressively load the prey items.

use ENVO ontology to classify environments (aka biomes, habitat)

Interactions currently contains spatial information in the form of latitude / longitude. In addition to this, GloBI should have a way to model the kind of location that the interaction occurred in. ENVO, an environmental ontology http://code.google.com/p/envo or http://environmentontology.org/ has taken up the task to provide an "EnvO is a community ontology for the concise, controlled description of environments". For now, we'd like to use ENVO in GloBI to classify environments.

Using this, you can ask questions like: "Which mammals do humans prey on in coastal waters?"

merge gomexsi and gomexsi_km datasets

Currently, two datasets exist related to data extracted by GoMexSI from existing references: gomexsi and gomexsi_km.

As discussed, please merge the two datasets into gomexsi .

If new updates for gomexsi extracted literature are available, please append to gomexsi dataset.

REST search for prey for humans as CSV has invalid rows

http://trophicgraph.com:8080/taxon/Homo%20sapiens/preysOn?type=csv

should produce something like:

source_taxon_name	interaction_type	target_taxon_name
Homo sapiens	preysOn	prey 1
Homo sapiens	preysOn	prey 2

but now produces something like:

source_taxon_name	interaction_type	target_taxon_name
Homo sapiens	preysOn	prey 1
prey 2

consider leaflet (javascript lbrary) for making lightweight spatial widgets for spatial overview of interactions

http://leafletjs.com/

integrate with KelpForest database

http://kelpforest.ucsc.edu/

filter / sort reference by source in references

as suggested by Jim.

filter / sort reference by source in references
http://eol-globi.github.io/references.html

import interaction data from Anne Thessen https://github.com/EOL/pseudonitzchia

See https://github.com/EOL/pseudonitzchia/blob/master/README.md for more information.

suggested by @diatomsRcool

contact dataset owners / curators and ask for taxonomic references for (currently) unmatched taxa

In the darwincore export (see Accessing Interaction Data), there are two lists containing unmatched taxon names for specific studies / datasets. Current taxonomic matching services used are: WoRMS, ITIS, GulfBase and EOL.

We need to contact the authors/ curators of the datasets and ask them for more information about the names used. Hopefully, they'll suggest another taxonomic service that we can use to successfully cross check the names.

suggest to add Raymond et al (2011) A Southern Ocean Diet database

as suggested by Brian Hayden:

A Southern Ocean Diet Databae from a publication in Ecology. This data is available to download from Ecological Archives http://esapubs.org/archive/ecol/E092/097/default.htm

Include authority or reason in taxonomy normalization data / report

From Jim's email April 8, 2013 in response to http://tinyurl.com/normalizedTaxonNames
[...]
We might want to include the authority that we used to make the name change, ie ITIS, Worms, EOL, etc. We also might want to rather than say corrected use the term normalized or some other term. I am only saying this as there are heated battles in taxonomic circles over some names, and you can find some species under different names depending on the database and the authority used. But for our purposes, we need to settle on a single name for each species, so we are normalizing or standardizing the taxonomy for our purposes.
[...]

add Hechinger et al. (2011) dataset

request to add LifeWatch Greece Polytraits dataset to GloBI

Hmm... I am processing a very interesting mixed dataset, some associations but mostly other stuff. Polychaete worms, about 800 species, fun stuff. The final version is not up yet (draft version at http://eol.org/collections/97431/taxa) and it's not too late to split out the associations and route them through GloBI, but this will probably happen again and again with bits and pieces of mixed datasets. Should we consider ways for GloBI to consume data from EOL, requirements for deduplication, etc?

include a what eat .... page in addition to what does ... eat?

suggested by Jim.

similar to http://eol-globi.github.io/index.html

introduce more flexible taxon name matching: if species name does not match, then use genus.

To allow for better linkage between taxon names and available taxonomies, introduce a way to match a species or subspecies using its genus.

For instance, with current matching algorithms the name:
Cortinarius brunneus var. glandicolor does not match eol, itis or any other supported name matching services. However Cortinarius brunneus or even Cortinarius probably does match.

Suggest to truncate name to higher order taxon names before giving up the matching altogether. Rational is that it is better to know the higher order taxon, then nothing at all.

publish GloBI data dictionary.

publish a wiki page that contains the data elements that GloBI supports (e.g. taxon name, locations, physiological state). Include links to external ontologies and dictionary.

check predator / source taxon mapping mismatches

in recent eol-globi normalization runs, some source/ predator taxa names didn't match against an external taxonomy. Kindly go over the attached list and provide names that do match in form of csv/ excel sheet with fields like:

original taxon name	corrected taxon name
Homo saliens	Homo sapiens

--- mismatched list:

"name of unmatched predator taxon"," study title in which predator was referenced"
"Collisella jamaicensis","ROOPNARINE"
"Lithopoma tecta","ROOPNARINE"
"insectivores","SPIRE"
"Pitar fulminata","ROOPNARINE"
"Spilogale putorius gracilis","SPIRE"
"Crepidocantha setigera","ROOPNARINE"
"Krohniita subtilis","ROOPNARINE"
"Nemertines","SPIRE"
"Mylothris kilimensis","JRFerrisParisButterflies"
"Colpophyliia amaranthus","ROOPNARINE"
"Crocethia alba","SPIRE"
"Parazoanthus monostichus","ROOPNARINE"
"Verongula ardia","ROOPNARINE"
"Mylothris sulphurea","JRFerrisParisButterflies"
"Ecdyonuridae","SPIRE"
"Clio acicula","ROOPNARINE"
"Catasticta hegemon","JRFerrisParisButterflies"
"Coralliophila caribbaea","ROOPNARINE"
"Parycyathus defilippi","ROOPNARINE"
"Conorbulina","ROOPNARINE"
"Spheciosponia vesparium","ROOPNARINE"
"Caryophyllia flos","ROOPNARINE"
"Oncaea meditteranea","ROOPNARINE"
"Theridion ovatum","SPIRE"
"Urophysis chuss","BARNES"
"Aegires oritzi","ROOPNARINE"
"Catasticta bithys","JRFerrisParisButterflies"
"Mycetophyllia lamarckana","ROOPNARINE"
"Turbo caillettii","ROOPNARINE"
"Mylothris ruandana","JRFerrisParisButterflies"
"Cymphoma mcgintyi","ROOPNARINE"
"Cribochalina dura","ROOPNARINE"
"Red racer","SPIRE"
"cactus weevils","SPIRE"
"Haplochromis chrysonotus","SPIRE"
"Mithrax sculptus","ROOPNARINE"
"S. enflata","ROOPNARINE"
"Free bacteria in water column/DOC","SPIRE"
"Protopalythoa fusca","ROOPNARINE"
"bacteria/protozoa","SPIRE"
"carnivores","SPIRE"
"Limicina","ROOPNARINE"
"Hexatomini","SPIRE"
"Oculina valenciennesii","ROOPNARINE"
"Litopeneaus setiferus","akinMadIsland"
"Mithrax caribbaeus","ROOPNARINE"
"Alligator","SPIRE"
"Homoptera","BIO_INFO"
"Oligoceras violacea","ROOPNARINE"
"Exochonella antillea","ROOPNARINE"
"Eriopterini","SPIRE"
"Mylothris ochracea","JRFerrisParisButterflies"
"Myiatropa","SPIRE"
"fox","SPIRE"
"Cypraeacassis testiculus","ROOPNARINE"
"decomposers/microfauna","SPIRE"
"Mathania carrizoi","JRFerrisParisButterflies"
"Cambarus propinquus","SPIRE"
"Synalpheus pandionensis","ROOPNARINE"
"Trichopria","SPIRE"
"Lutjanus mahagoni","ROOPNARINE"
"Zoanthus flosmarinus","ROOPNARINE"
"Vellidae","SPIRE"
"limpets","SPIRE"
"Tubastrea tenuilamellosa","ROOPNARINE"
"Sciurognathi","SPIRE"
"Mylothris spica","JRFerrisParisButterflies"
"Medusae","SPIRE"
"Helmidae","SPIRE"
"Hesperocharis leucanta","JRFerrisParisButterflies"
"Chorizopora brongniarti","ROOPNARINE"
"NomenNescio","SPIRE"
"roach","SPIRE"
"Daphnia rosea","SPIRE"
"Corycaeus amazonicu","ROOPNARINE"
"Mithrax coryphe","ROOPNARINE"
"Pitho iherminieri","ROOPNARINE"
"G.","SPIRE"
"Geosargus cuprarius","SPIRE"
"ciliates","SPIRE"
"Synalpheus fritzmulleri","ROOPNARINE"
"Mylothris nubila","JRFerrisParisButterflies"
"Bracyscelus crusculum","ROOPNARINE"
"Caracal","SPIRE"
"Cliona laticovicola","ROOPNARINE"
"Parapinnixa bouvier","ROOPNARINE"
"salakka","SPIRE"
"Platydoris augustipes","ROOPNARINE"
"Mithrax ruber","ROOPNARINE"
"Bison","SPIRE"
"Tritonopsis frydis","ROOPNARINE"
"Microctonus aethiops/secalis","SPIRE"
"Pseudocertina crassa","ROOPNARINE"
"Mylothris rueppellii","JRFerrisParisButterflies"
"Hesperocharis anguitia","JRFerrisParisButterflies"
"Spheciosponia cuspidifera","ROOPNARINE"
"Petrolishtes galathinus","ROOPNARINE"
"Mylothris talboti","JRFerrisParisButterflies"
"Farfantepeneaus aztecus","akinMadIsland"
"Lithopoma caelata","ROOPNARINE"
"Aka brevitubulatum","ROOPNARINE"
"Melete salacia","JRFerrisParisButterflies"
"Paroxyethira eatoni/hintoni","SPIRE"
"Hesperocharis paranensis","JRFerrisParisButterflies"
"Pseudotropheus zebra","SPIRE"
"bleak","SPIRE"
"Diplodus caudimaculata","ROOPNARINE"
"Mylothris kiwuensis","JRFerrisParisButterflies"
"Phaenicia sericata","SPIRE"
"Drepanophora tuberculatum","ROOPNARINE"
"Collisella pustulata","ROOPNARINE"
"Rotatoria","SPIRE"
"Goniaulax tamarensis","ROOPNARINE"
"Mithrax cinctimanus","ROOPNARINE"
"Agathis","SPIRE"
"detritivore","SPIRE"
"slime molds","SPIRE"
"caplin","SPIRE"
"Verongia gigantea","ROOPNARINE"
"Priomis","ROOPNARINE"
"Collisella jamaicensis","ROOPNARINE"
"Lithopoma tecta","ROOPNARINE"
"insectivores","SPIRE"
"Pitar fulminata","ROOPNARINE"
"Spilogale putorius gracilis","SPIRE"
"Crepidocantha setigera","ROOPNARINE"
"Krohniita subtilis","ROOPNARINE"
"Nemertines","SPIRE"
"Mylothris kilimensis","JRFerrisParisButterflies"
"Colpophyliia amaranthus","ROOPNARINE"
"Crocethia alba","SPIRE"
"Parazoanthus monostichus","ROOPNARINE"
"Verongula ardia","ROOPNARINE"
"Mylothris sulphurea","JRFerrisParisButterflies"
"Ecdyonuridae","SPIRE"
"Clio acicula","ROOPNARINE"
"Catasticta hegemon","JRFerrisParisButterflies"
"Coralliophila caribbaea","ROOPNARINE"
"Parycyathus defilippi","ROOPNARINE"
"Conorbulina","ROOPNARINE"
"Spheciosponia vesparium","ROOPNARINE"
"Caryophyllia flos","ROOPNARINE"
"Oncaea meditteranea","ROOPNARINE"
"Theridion ovatum","SPIRE"
"Urophysis chuss","BARNES"
"Aegires oritzi","ROOPNARINE"
"Catasticta bithys","JRFerrisParisButterflies"
"Mycetophyllia lamarckana","ROOPNARINE"
"Turbo caillettii","ROOPNARINE"
"Mylothris ruandana","JRFerrisParisButterflies"
"Cymphoma mcgintyi","ROOPNARINE"
"Cribochalina dura","ROOPNARINE"
"Red racer","SPIRE"
"cactus weevils","SPIRE"
"Haplochromis chrysonotus","SPIRE"
"Mithrax sculptus","ROOPNARINE"
"S. enflata","ROOPNARINE"
"Free bacteria in water column/DOC","SPIRE"
"Protopalythoa fusca","ROOPNARINE"
"bacteria/protozoa","SPIRE"
"carnivores","SPIRE"
"Limicina","ROOPNARINE"
"Hexatomini","SPIRE"
"Oculina valenciennesii","ROOPNARINE"
"Litopeneaus setiferus","akinMadIsland"
"Mithrax caribbaeus","ROOPNARINE"
"Alligator","SPIRE"
"Homoptera","BIO_INFO"
"Oligoceras violacea","ROOPNARINE"
"Exochonella antillea","ROOPNARINE"
"Eriopterini","SPIRE"
"Mylothris ochracea","JRFerrisParisButterflies"
"Myiatropa","SPIRE"
"fox","SPIRE"
"Cypraeacassis testiculus","ROOPNARINE"
"decomposers/microfauna","SPIRE"
"Mathania carrizoi","JRFerrisParisButterflies"
"Cambarus propinquus","SPIRE"
"Synalpheus pandionensis","ROOPNARINE"
"Trichopria","SPIRE"
"Lutjanus mahagoni","ROOPNARINE"
"Zoanthus flosmarinus","ROOPNARINE"
"Vellidae","SPIRE"
"limpets","SPIRE"
"Tubastrea tenuilamellosa","ROOPNARINE"
"Sciurognathi","SPIRE"
"Mylothris spica","JRFerrisParisButterflies"
"Medusae","SPIRE"
"Helmidae","SPIRE"
"Hesperocharis leucanta","JRFerrisParisButterflies"
"Chorizopora brongniarti","ROOPNARINE"
"NomenNescio","SPIRE"
"roach","SPIRE"
"Daphnia rosea","SPIRE"
"Corycaeus amazonicu","ROOPNARINE"
"Mithrax coryphe","ROOPNARINE"
"Pitho iherminieri","ROOPNARINE"
"G.","SPIRE"
"Geosargus cuprarius","SPIRE"
"ciliates","SPIRE"
"Synalpheus fritzmulleri","ROOPNARINE"
"Mylothris nubila","JRFerrisParisButterflies"
"Bracyscelus crusculum","ROOPNARINE"
"Caracal","SPIRE"
"Cliona laticovicola","ROOPNARINE"
"Parapinnixa bouvier","ROOPNARINE"
"salakka","SPIRE"
"Platydoris augustipes","ROOPNARINE"
"Mithrax ruber","ROOPNARINE"
"Bison","SPIRE"
"Tritonopsis frydis","ROOPNARINE"
"Microctonus aethiops/secalis","SPIRE"
"Pseudocertina crassa","ROOPNARINE"
"Mylothris rueppellii","JRFerrisParisButterflies"
"Hesperocharis anguitia","JRFerrisParisButterflies"
"Spheciosponia cuspidifera","ROOPNARINE"
"Petrolishtes galathinus","ROOPNARINE"
"Mylothris talboti","JRFerrisParisButterflies"
"Farfantepeneaus aztecus","akinMadIsland"
"Lithopoma caelata","ROOPNARINE"
"Aka brevitubulatum","ROOPNARINE"
"Melete salacia","JRFerrisParisButterflies"
"Paroxyethira eatoni/hintoni","SPIRE"
"Hesperocharis paranensis","JRFerrisParisButterflies"
"Pseudotropheus zebra","SPIRE"
"bleak","SPIRE"
"Diplodus caudimaculata","ROOPNARINE"
"Mylothris kiwuensis","JRFerrisParisButterflies"
"Phaenicia sericata","SPIRE"
"Drepanophora tuberculatum","ROOPNARINE"
"Collisella pustulata","ROOPNARINE"
"Rotatoria","SPIRE"
"Goniaulax tamarensis","ROOPNARINE"
"Mithrax cinctimanus","ROOPNARINE"
"Agathis","SPIRE"
"detritivore","SPIRE"
"slime molds","SPIRE"
"caplin","SPIRE"
"Verongia gigantea","ROOPNARINE"
"Priomis","ROOPNARINE"
"Collisella jamaicensis","ROOPNARINE"
"Lithopoma tecta","ROOPNARINE"
"insectivores","SPIRE"
"Pitar fulminata","ROOPNARINE"
"Spilogale putorius gracilis","SPIRE"
"Crepidocantha setigera","ROOPNARINE"
"Krohniita subtilis","ROOPNARINE"
"Nemertines","SPIRE"
"Mylothris kilimensis","JRFerrisParisButterflies"
"Colpophyliia amaranthus","ROOPNARINE"
"Crocethia alba","SPIRE"
"Parazoanthus monostichus","ROOPNARINE"
"Verongula ardia","ROOPNARINE"
"Mylothris sulphurea","JRFerrisParisButterflies"
"Ecdyonuridae","SPIRE"
"Clio acicula","ROOPNARINE"
"Catasticta hegemon","JRFerrisParisButterflies"
"Coralliophila caribbaea","ROOPNARINE"
"Parycyathus defilippi","ROOPNARINE"
"Conorbulina","ROOPNARINE"
"Spheciosponia vesparium","ROOPNARINE"
"Caryophyllia flos","ROOPNARINE"
"Oncaea meditteranea","ROOPNARINE"
"Theridion ovatum","SPIRE"
"Urophysis chuss","BARNES"
"Aegires oritzi","ROOPNARINE"
"Catasticta bithys","JRFerrisParisButterflies"
"Mycetophyllia lamarckana","ROOPNARINE"
"Turbo caillettii","ROOPNARINE"
"Mylothris ruandana","JRFerrisParisButterflies"
"Cymphoma mcgintyi","ROOPNARINE"
"Cribochalina dura","ROOPNARINE"
"Red racer","SPIRE"
"cactus weevils","SPIRE"
"Haplochromis chrysonotus","SPIRE"
"Mithrax sculptus","ROOPNARINE"
"S. enflata","ROOPNARINE"
"Free bacteria in water column/DOC","SPIRE"
"Protopalythoa fusca","ROOPNARINE"
"bacteria/protozoa","SPIRE"
"carnivores","SPIRE"
"Limicina","ROOPNARINE"
"Hexatomini","SPIRE"
"Oculina valenciennesii","ROOPNARINE"
"Litopeneaus setiferus","akinMadIsland"
"Mithrax caribbaeus","ROOPNARINE"
"Alligator","SPIRE"
"Homoptera","BIO_INFO"
"Oligoceras violacea","ROOPNARINE"
"Exochonella antillea","ROOPNARINE"
"Eriopterini","SPIRE"
"Mylothris ochracea","JRFerrisParisButterflies"
"Myiatropa","SPIRE"
"fox","SPIRE"
"Cypraeacassis testiculus","ROOPNARINE"
"decomposers/microfauna","SPIRE"
"Mathania carrizoi","JRFerrisParisButterflies"
"Cambarus propinquus","SPIRE"
"Synalpheus pandionensis","ROOPNARINE"
"Trichopria","SPIRE"
"Lutjanus mahagoni","ROOPNARINE"
"Zoanthus flosmarinus","ROOPNARINE"
"Vellidae","SPIRE"
"limpets","SPIRE"
"Tubastrea tenuilamellosa","ROOPNARINE"
"Sciurognathi","SPIRE"
"Mylothris spica","JRFerrisParisButterflies"
"Medusae","SPIRE"
"Helmidae","SPIRE"
"Hesperocharis leucanta","JRFerrisParisButterflies"
"Chorizopora brongniarti","ROOPNARINE"
"NomenNescio","SPIRE"
"roach","SPIRE"
"Daphnia rosea","SPIRE"
"Corycaeus amazonicu","ROOPNARINE"
"Mithrax coryphe","ROOPNARINE"
"Pitho iherminieri","ROOPNARINE"
"G.","SPIRE"
"Geosargus cuprarius","SPIRE"
"ciliates","SPIRE"
"Synalpheus fritzmulleri","ROOPNARINE"
"Mylothris nubila","JRFerrisParisButterflies"
"Bracyscelus crusculum","ROOPNARINE"
"Caracal","SPIRE"
"Cliona laticovicola","ROOPNARINE"
"Parapinnixa bouvier","ROOPNARINE"
"salakka","SPIRE"
"Platydoris augustipes","ROOPNARINE"
"Mithrax ruber","ROOPNARINE"
"Bison","SPIRE"
"Tritonopsis frydis","ROOPNARINE"
"Microctonus aethiops/secalis","SPIRE"
"Pseudocertina crassa","ROOPNARINE"
"Mylothris rueppellii","JRFerrisParisButterflies"
"Hesperocharis anguitia","JRFerrisParisButterflies"
"Spheciosponia cuspidifera","ROOPNARINE"
"Petrolishtes galathinus","ROOPNARINE"
"Mylothris talboti","JRFerrisParisButterflies"
"Farfantepeneaus aztecus","akinMadIsland"
"Lithopoma caelata","ROOPNARINE"
"Aka brevitubulatum","ROOPNARINE"
"Melete salacia","JRFerrisParisButterflies"
"Paroxyethira eatoni/hintoni","SPIRE"
"Hesperocharis paranensis","JRFerrisParisButterflies"
"Pseudotropheus zebra","SPIRE"
"bleak","SPIRE"
"Diplodus caudimaculata","ROOPNARINE"
"Mylothris kiwuensis","JRFerrisParisButterflies"
"Phaenicia sericata","SPIRE"
"Drepanophora tuberculatum","ROOPNARINE"
"Collisella pustulata","ROOPNARINE"
"Rotatoria","SPIRE"
"Goniaulax tamarensis","ROOPNARINE"
"Mithrax cinctimanus","ROOPNARINE"
"Agathis","SPIRE"
"detritivore","SPIRE"
"slime molds","SPIRE"
"caplin","SPIRE"
"Verongia gigantea","ROOPNARINE"
"Priomis","ROOPNARINE"
"Collisella jamaicensis","ROOPNARINE"
"Lithopoma tecta","ROOPNARINE"
"insectivores","SPIRE"
"Pitar fulminata","ROOPNARINE"
"Spilogale putorius gracilis","SPIRE"
"Crepidocantha setigera","ROOPNARINE"
"Krohniita subtilis","ROOPNARINE"
"Nemertines","SPIRE"
"Mylothris kilimensis","JRFerrisParisButterflies"
"Colpophyliia amaranthus","ROOPNARINE"
"Crocethia alba","SPIRE"
"Parazoanthus monostichus","ROOPNARINE"
"Verongula ardia","ROOPNARINE"
"Mylothris sulphurea","JRFerrisParisButterflies"
"Ecdyonuridae","SPIRE"
"Clio acicula","ROOPNARINE"
"Catasticta hegemon","JRFerrisParisButterflies"
"Coralliophila caribbaea","ROOPNARINE"
"Parycyathus defilippi","ROOPNARINE"
"Conorbulina","ROOPNARINE"
"Spheciosponia vesparium","ROOPNARINE"
"Caryophyllia flos","ROOPNARINE"
"Oncaea meditteranea","ROOPNARINE"
"Theridion ovatum","SPIRE"
"Urophysis chuss","BARNES"
"Aegires oritzi","ROOPNARINE"
"Catasticta bithys","JRFerrisParisButterflies"
"Mycetophyllia lamarckana","ROOPNARINE"
"Turbo caillettii","ROOPNARINE"
"Mylothris ruandana","JRFerrisParisButterflies"
"Cymphoma mcgintyi","ROOPNARINE"
"Cribochalina dura","ROOPNARINE"
"Red racer","SPIRE"
"cactus weevils","SPIRE"
"Haplochromis chrysonotus","SPIRE"
"Mithrax sculptus","ROOPNARINE"
"S. enflata","ROOPNARINE"
"Free bacteria in water column/DOC","SPIRE"
"Protopalythoa fusca","ROOPNARINE"
"bacteria/protozoa","SPIRE"
"carnivores","SPIRE"
"Limicina","ROOPNARINE"
"Hexatomini","SPIRE"
"Oculina valenciennesii","ROOPNARINE"
"Litopeneaus setiferus","akinMadIsland"
"Mithrax caribbaeus","ROOPNARINE"
"Alligator","SPIRE"
"Homoptera","BIO_INFO"
"Oligoceras violacea","ROOPNARINE"
"Exochonella antillea","ROOPNARINE"
"Eriopterini","SPIRE"
"Mylothris ochracea","JRFerrisParisButterflies"
"Myiatropa","SPIRE"
"fox","SPIRE"
"Cypraeacassis testiculus","ROOPNARINE"
"decomposers/microfauna","SPIRE"
"Mathania carrizoi","JRFerrisParisButterflies"
"Cambarus propinquus","SPIRE"
"Synalpheus pandionensis","ROOPNARINE"
"Trichopria","SPIRE"
"Lutjanus mahagoni","ROOPNARINE"
"Zoanthus flosmarinus","ROOPNARINE"
"Vellidae","SPIRE"
"limpets","SPIRE"
"Tubastrea tenuilamellosa","ROOPNARINE"
"Sciurognathi","SPIRE"
"Mylothris spica","JRFerrisParisButterflies"
"Medusae","SPIRE"
"Helmidae","SPIRE"
"Hesperocharis leucanta","JRFerrisParisButterflies"
"Chorizopora brongniarti","ROOPNARINE"
"NomenNescio","SPIRE"
"roach","SPIRE"
"Daphnia rosea","SPIRE"
"Corycaeus amazonicu","ROOPNARINE"
"Mithrax coryphe","ROOPNARINE"
"Pitho iherminieri","ROOPNARINE"
"G.","SPIRE"
"Geosargus cuprarius","SPIRE"
"ciliates","SPIRE"
"Synalpheus fritzmulleri","ROOPNARINE"
"Mylothris nubila","JRFerrisParisButterflies"
"Bracyscelus crusculum","ROOPNARINE"
"Caracal","SPIRE"
"Cliona laticovicola","ROOPNARINE"
"Parapinnixa bouvier","ROOPNARINE"
"salakka","SPIRE"
"Platydoris augustipes","ROOPNARINE"
"Mithrax ruber","ROOPNARINE"
"Bison","SPIRE"
"Tritonopsis frydis","ROOPNARINE"
"Microctonus aethiops/secalis","SPIRE"
"Pseudocertina crassa","ROOPNARINE"
"Mylothris rueppellii","JRFerrisParisButterflies"
"Hesperocharis anguitia","JRFerrisParisButterflies"
"Spheciosponia cuspidifera","ROOPNARINE"
"Petrolishtes galathinus","ROOPNARINE"
"Mylothris talboti","JRFerrisParisButterflies"
"Farfantepeneaus aztecus","akinMadIsland"
"Lithopoma caelata","ROOPNARINE"
"Aka brevitubulatum","ROOPNARINE"
"Melete salacia","JRFerrisParisButterflies"
"Paroxyethira eatoni/hintoni","SPIRE"
"Hesperocharis paranensis","JRFerrisParisButterflies"
"Pseudotropheus zebra","SPIRE"
"bleak","SPIRE"
"Diplodus caudimaculata","ROOPNARINE"
"Mylothris kiwuensis","JRFerrisParisButterflies"
"Phaenicia sericata","SPIRE"
"Drepanophora tuberculatum","ROOPNARINE"
"Collisella pustulata","ROOPNARINE"
"Rotatoria","SPIRE"
"Goniaulax tamarensis","ROOPNARINE"
"Mithrax cinctimanus","ROOPNARINE"
"Agathis","SPIRE"
"detritivore","SPIRE"
"slime molds","SPIRE"
"caplin","SPIRE"
"Verongia gigantea","ROOPNARINE"
"Priomis","ROOPNARINE"
"Collisella jamaicensis","ROOPNARINE"
"Lithopoma tecta","ROOPNARINE"
"insectivores","SPIRE"
"Pitar fulminata","ROOPNARINE"
"Spilogale putorius gracilis","SPIRE"
"Crepidocantha setigera","ROOPNARINE"
"Krohniita subtilis","ROOPNARINE"
"Nemertines","SPIRE"
"Mylothris kilimensis","JRFerrisParisButterflies"
"Colpophyliia amaranthus","ROOPNARINE"
"Crocethia alba","SPIRE"
"Parazoanthus monostichus","ROOPNARINE"
"Verongula ardia","ROOPNARINE"
"Mylothris sulphurea","JRFerrisParisButterflies"
"Ecdyonuridae","SPIRE"
"Clio acicula","ROOPNARINE"
"Catasticta hegemon","JRFerrisParisButterflies"
"Coralliophila caribbaea","ROOPNARINE"
"Parycyathus defilippi","ROOPNARINE"
"Conorbulina","ROOPNARINE"
"Spheciosponia vesparium","ROOPNARINE"
"Caryophyllia flos","ROOPNARINE"
"Oncaea meditteranea","ROOPNARINE"
"Theridion ovatum","SPIRE"
"Urophysis chuss","BARNES"
"Aegires oritzi","ROOPNARINE"
"Catasticta bithys","JRFerrisParisButterflies"
"Mycetophyllia lamarckana","ROOPNARINE"
"Turbo caillettii","ROOPNARINE"
"Mylothris ruandana","JRFerrisParisButterflies"
"Cymphoma mcgintyi","ROOPNARINE"
"Cribochalina dura","ROOPNARINE"
"Red racer","SPIRE"
"cactus weevils","SPIRE"
"Haplochromis chrysonotus","SPIRE"
"Mithrax sculptus","ROOPNARINE"
"S. enflata","ROOPNARINE"
"Free bacteria in water column/DOC","SPIRE"
"Protopalythoa fusca","ROOPNARINE"
"bacteria/protozoa","SPIRE"
"carnivores","SPIRE"
"Limicina","ROOPNARINE"
"Hexatomini","SPIRE"
"Oculina valenciennesii","ROOPNARINE"
"Litopeneaus setiferus","akinMadIsland"
"Mithrax caribbaeus","ROOPNARINE"
"Alligator","SPIRE"
"Homoptera","BIO_INFO"
"Oligoceras violacea","ROOPNARINE"
"Exochonella antillea","ROOPNARINE"
"Eriopterini","SPIRE"
"Mylothris ochracea","JRFerrisParisButterflies"
"Myiatropa","SPIRE"
"fox","SPIRE"
"Cypraeacassis testiculus","ROOPNARINE"
"decomposers/microfauna","SPIRE"
"Mathania carrizoi","JRFerrisParisButterflies"
"Cambarus propinquus","SPIRE"
"Synalpheus pandionensis","ROOPNARINE"
"Trichopria","SPIRE"
"Lutjanus mahagoni","ROOPNARINE"
"Zoanthus flosmarinus","ROOPNARINE"
"Vellidae","SPIRE"
"limpets","SPIRE"
"Tubastrea tenuilamellosa","ROOPNARINE"
"Sciurognathi","SPIRE"
"Mylothris spica","JRFerrisParisButterflies"
"Medusae","SPIRE"
"Helmidae","SPIRE"
"Hesperocharis leucanta","JRFerrisParisButterflies"
"Chorizopora brongniarti","ROOPNARINE"
"NomenNescio","SPIRE"
"roach","SPIRE"
"Daphnia rosea","SPIRE"
"Corycaeus amazonicu","ROOPNARINE"
"Mithrax coryphe","ROOPNARINE"
"Pitho iherminieri","ROOPNARINE"
"G.","SPIRE"
"Geosargus cuprarius","SPIRE"
"ciliates","SPIRE"
"Synalpheus fritzmulleri","ROOPNARINE"
"Mylothris nubila","JRFerrisParisButterflies"
"Bracyscelus crusculum","ROOPNARINE"
"Caracal","SPIRE"
"Cliona laticovicola","ROOPNARINE"
"Parapinnixa bouvier","ROOPNARINE"
"salakka","SPIRE"
"Platydoris augustipes","ROOPNARINE"
"Mithrax ruber","ROOPNARINE"
"Bison","SPIRE"
"Tritonopsis frydis","ROOPNARINE"
"Microctonus aethiops/secalis","SPIRE"
"Pseudocertina crassa","ROOPNARINE"
"Mylothris rueppellii","JRFerrisParisButterflies"
"Hesperocharis anguitia","JRFerrisParisButterflies"
"Spheciosponia cuspidifera","ROOPNARINE"
"Petrolishtes galathinus","ROOPNARINE"
"Mylothris talboti","JRFerrisParisButterflies"
"Farfantepeneaus aztecus","akinMadIsland"
"Lithopoma caelata","ROOPNARINE"
"Aka brevitubulatum","ROOPNARINE"
"Melete salacia","JRFerrisParisButterflies"
"Paroxyethira eatoni/hintoni","SPIRE"
"Hesperocharis paranensis","JRFerrisParisButterflies"
"Pseudotropheus zebra","SPIRE"
"bleak","SPIRE"
"Diplodus caudimaculata","ROOPNARINE"
"Mylothris kiwuensis","JRFerrisParisButterflies"
"Phaenicia sericata","SPIRE"
"Drepanophora tuberculatum","ROOPNARINE"
"Collisella pustulata","ROOPNARINE"
"Rotatoria","SPIRE"
"Goniaulax tamarensis","ROOPNARINE"
"Mithrax cinctimanus","ROOPNARINE"
"Agathis","SPIRE"
"detritivore","SPIRE"
"slime molds","SPIRE"
"caplin","SPIRE"
"Verongia gigantea","ROOPNARINE"
"Priomis","ROOPNARINE"
"Collisella jamaicensis","ROOPNARINE"
"Lithopoma tecta","ROOPNARINE"
"insectivores","SPIRE"
"Pitar fulminata","ROOPNARINE"
"Spilogale putorius gracilis","SPIRE"
"Crepidocantha setigera","ROOPNARINE"
"Krohniita subtilis","ROOPNARINE"
"Nemertines","SPIRE"
"Mylothris kilimensis","JRFerrisParisButterflies"
"Colpophyliia amaranthus","ROOPNARINE"
"Crocethia alba","SPIRE"
"Parazoanthus monostichus","ROOPNARINE"
"Verongula ardia","ROOPNARINE"
"Mylothris sulphurea","JRFerrisParisButterflies"
"Ecdyonuridae","SPIRE"
"Clio acicula","ROOPNARINE"
"Catasticta hegemon","JRFerrisParisButterflies"
"Coralliophila caribbaea","ROOPNARINE"
"Parycyathus defilippi","ROOPNARINE"
"Conorbulina","ROOPNARINE"
"Spheciosponia vesparium","ROOPNARINE"
"Caryophyllia flos","ROOPNARINE"
"Oncaea meditteranea","ROOPNARINE"
"Theridion ovatum","SPIRE"
"Urophysis chuss","BARNES"
"Aegires oritzi","ROOPNARINE"
"Catasticta bithys","JRFerrisParisButterflies"
"Mycetophyllia lamarckana","ROOPNARINE"
"Turbo caillettii","ROOPNARINE"
"Mylothris ruandana","JRFerrisParisButterflies"
"Cymphoma mcgintyi","ROOPNARINE"
"Cribochalina dura","ROOPNARINE"
"Red racer","SPIRE"
"cactus weevils","SPIRE"
"Haplochromis chrysonotus","SPIRE"
"Mithrax sculptus","ROOPNARINE"
"S. enflata","ROOPNARINE"
"Free bacteria in water column/DOC","SPIRE"
"Protopalythoa fusca","ROOPNARINE"
"bacteria/protozoa","SPIRE"
"carnivores","SPIRE"
"Limicina","ROOPNARINE"
"Hexatomini","SPIRE"
"Oculina valenciennesii","ROOPNARINE"
"Litopeneaus setiferus","akinMadIsland"
"Mithrax caribbaeus","ROOPNARINE"
"Alligator","SPIRE"
"Homoptera","BIO_INFO"
"Oligoceras violacea","ROOPNARINE"
"Exochonella antillea","ROOPNARINE"
"Eriopterini","SPIRE"
"Mylothris ochracea","JRFerrisParisButterflies"
"Myiatropa","SPIRE"
"fox","SPIRE"
"Cypraeacassis testiculus","ROOPNARINE"
"decomposers/microfauna","SPIRE"
"Mathania carrizoi","JRFerrisParisButterflies"
"Cambarus propinquus","SPIRE"
"Synalpheus pandionensis","ROOPNARINE"
"Trichopria","SPIRE"
"Lutjanus mahagoni","ROOPNARINE"
"Zoanthus flosmarinus","ROOPNARINE"
"Vellidae","SPIRE"
"limpets","SPIRE"
"Tubastrea tenuilamellosa","ROOPNARINE"
"Sciurognathi","SPIRE"
"Mylothris spica","JRFerrisParisButterflies"
"Medusae","SPIRE"
"Helmidae","SPIRE"
"Hesperocharis leucanta","JRFerrisParisButterflies"
"Chorizopora brongniarti","ROOPNARINE"
"NomenNescio","SPIRE"
"roach","SPIRE"
"Daphnia rosea","SPIRE"
"Corycaeus amazonicu","ROOPNARINE"
"Mithrax coryphe","ROOPNARINE"
"Pitho iherminieri","ROOPNARINE"
"G.","SPIRE"
"Geosargus cuprarius","SPIRE"
"ciliates","SPIRE"
"Synalpheus fritzmulleri","ROOPNARINE"
"Mylothris nubila","JRFerrisParisButterflies"
"Bracyscelus crusculum","ROOPNARINE"
"Caracal","SPIRE"
"Cliona laticovicola","ROOPNARINE"
"Parapinnixa bouvier","ROOPNARINE"
"salakka","SPIRE"
"Platydoris augustipes","ROOPNARINE"
"Mithrax ruber","ROOPNARINE"
"Bison","SPIRE"
"Tritonopsis frydis","ROOPNARINE"
"Microctonus aethiops/secalis","SPIRE"
"Pseudocertina crassa","ROOPNARINE"
"Mylothris rueppellii","JRFerrisParisButterflies"
"Hesperocharis anguitia","JRFerrisParisButterflies"
"Spheciosponia cuspidifera","ROOPNARINE"
"Petrolishtes galathinus","ROOPNARINE"
"Mylothris talboti","JRFerrisParisButterflies"
"Farfantepeneaus aztecus","akinMadIsland"
"Lithopoma caelata","ROOPNARINE"
"Aka brevitubulatum","ROOPNARINE"
"Melete salacia","JRFerrisParisButterflies"
"Paroxyethira eatoni/hintoni","SPIRE"
"Hesperocharis paranensis","JRFerrisParisButterflies"
"Pseudotropheus zebra","SPIRE"
"bleak","SPIRE"
"Diplodus caudimaculata","ROOPNARINE"
"Mylothris kiwuensis","JRFerrisParisButterflies"
"Phaenicia sericata","SPIRE"
"Drepanophora tuberculatum","ROOPNARINE"
"Collisella pustulata","ROOPNARINE"
"Rotatoria","SPIRE"
"Goniaulax tamarensis","ROOPNARINE"
"Mithrax cinctimanus","ROOPNARINE"
"Agathis","SPIRE"
"detritivore","SPIRE"
"slime molds","SPIRE"
"caplin","SPIRE"
"Verongia gigantea","ROOPNARINE"
"Priomis","ROOPNARINE"
"Collisella jamaicensis","ROOPNARINE"
"Lithopoma tecta","ROOPNARINE"
"insectivores","SPIRE"
"Pitar fulminata","ROOPNARINE"
"Spilogale putorius gracilis","SPIRE"
"Crepidocantha setigera","ROOPNARINE"
"Krohniita subtilis","ROOPNARINE"
"Nemertines","SPIRE"
"Mylothris kilimensis","JRFerrisParisButterflies"
"Colpophyliia amaranthus","ROOPNARINE"
"Crocethia alba","SPIRE"
"Parazoanthus monostichus","ROOPNARINE"
"Verongula ardia","ROOPNARINE"
"Mylothris sulphurea","JRFerrisParisButterflies"
"Ecdyonuridae","SPIRE"
"Clio acicula","ROOPNARINE"
"Catasticta hegemon","JRFerrisParisButterflies"
"Coralliophila caribbaea","ROOPNARINE"
"Parycyathus defilippi","ROOPNARINE"
"Conorbulina","ROOPNARINE"
"Spheciosponia vesparium","ROOPNARINE"
"Caryophyllia flos","ROOPNARINE"
"Oncaea meditteranea","ROOPNARINE"
"Theridion ovatum","SPIRE"
"Urophysis chuss","BARNES"
"Aegires oritzi","ROOPNARINE"
"Catasticta bithys","JRFerrisParisButterflies"
"Mycetophyllia lamarckana","ROOPNARINE"
"Turbo caillettii","ROOPNARINE"
"Mylothris ruandana","JRFerrisParisButterflies"
"Cymphoma mcgintyi","ROOPNARINE"
"Cribochalina dura","ROOPNARINE"
"Red racer","SPIRE"
"cactus weevils","SPIRE"
"Haplochromis chrysonotus","SPIRE"
"Mithrax sculptus","ROOPNARINE"
"S. enflata","ROOPNARINE"
"Free bacteria in water column/DOC","SPIRE"
"Protopalythoa fusca","ROOPNARINE"
"bacteria/protozoa","SPIRE"
"carnivores","SPIRE"
"Limicina","ROOPNARINE"
"Hexatomini","SPIRE"
"Oculina valenciennesii","ROOPNARINE"
"Litopeneaus setiferus","akinMadIsland"
"Mithrax caribbaeus","ROOPNARINE"
"Alligator","SPIRE"
"Homoptera","BIO_INFO"
"Oligoceras violacea","ROOPNARINE"
"Exochonella antillea","ROOPNARINE"
"Eriopterini","SPIRE"
"Mylothris ochracea","JRFerrisParisButterflies"
"Myiatropa","SPIRE"
"fox","SPIRE"
"Cypraeacassis testiculus","ROOPNARINE"
"decomposers/microfauna","SPIRE"
"Mathania carrizoi","JRFerrisParisButterflies"
"Cambarus propinquus","SPIRE"
"Synalpheus pandionensis","ROOPNARINE"
"Trichopria","SPIRE"
"Lutjanus mahagoni","ROOPNARINE"
"Zoanthus flosmarinus","ROOPNARINE"
"Vellidae","SPIRE"
"limpets","SPIRE"
"Tubastrea tenuilamellosa","ROOPNARINE"
"Sciurognathi","SPIRE"
"Mylothris spica","JRFerrisParisButterflies"
"Medusae","SPIRE"
"Helmidae","SPIRE"
"Hesperocharis leucanta","JRFerrisParisButterflies"
"Chorizopora brongniarti","ROOPNARINE"
"NomenNescio","SPIRE"
"roach","SPIRE"
"Daphnia rosea","SPIRE"
"Corycaeus amazonicu","ROOPNARINE"
"Mithrax coryphe","ROOPNARINE"
"Pitho iherminieri","ROOPNARINE"
"G.","SPIRE"
"Geosargus cuprarius","SPIRE"
"ciliates","SPIRE"
"Synalpheus fritzmulleri","ROOPNARINE"
"Mylothris nubila","JRFerrisParisButterflies"
"Bracyscelus crusculum","ROOPNARINE"
"Caracal","SPIRE"
"Cliona laticovicola","ROOPNARINE"
"Parapinnixa bouvier","ROOPNARINE"
"salakka","SPIRE"
"Platydoris augustipes","ROOPNARINE"
"Mithrax ruber","ROOPNARINE"
"Bison","SPIRE"
"Tritonopsis frydis","ROOPNARINE"
"Microctonus aethiops/secalis","SPIRE"
"Pseudocertina crassa","ROOPNARINE"
"Mylothris rueppellii","JRFerrisParisButterflies"
"Hesperocharis anguitia","JRFerrisParisButterflies"
"Spheciosponia cuspidifera","ROOPNARINE"
"Petrolishtes galathinus","ROOPNARINE"
"Mylothris talboti","JRFerrisParisButterflies"
"Farfantepeneaus aztecus","akinMadIsland"
"Lithopoma caelata","ROOPNARINE"
"Aka brevitubulatum","ROOPNARINE"
"Melete salacia","JRFerrisParisButterflies"
"Paroxyethira eatoni/hintoni","SPIRE"
"Hesperocharis paranensis","JRFerrisParisButterflies"
"Pseudotropheus zebra","SPIRE"
"bleak","SPIRE"
"Diplodus caudimaculata","ROOPNARINE"
"Mylothris kiwuensis","JRFerrisParisButterflies"
"Phaenicia sericata","SPIRE"
"Drepanophora tuberculatum","ROOPNARINE"
"Collisella pustulata","ROOPNARINE"
"Rotatoria","SPIRE"
"Goniaulax tamarensis","ROOPNARINE"
"Mithrax cinctimanus","ROOPNARINE"
"Agathis","SPIRE"
"detritivore","SPIRE"
"slime molds","SPIRE"
"caplin","SPIRE"
"Verongia gigantea","ROOPNARINE"
"Priomis","ROOPNARINE"
"Collisella jamaicensis","ROOPNARINE"
"Lithopoma tecta","ROOPNARINE"
"insectivores","SPIRE"
"Pitar fulminata","ROOPNARINE"
"Spilogale putorius gracilis","SPIRE"
"Crepidocantha setigera","ROOPNARINE"
"Krohniita subtilis","ROOPNARINE"
"Nemertines","SPIRE"
"Mylothris kilimensis","JRFerrisParisButterflies"
"Colpophyliia amaranthus","ROOPNARINE"
"Crocethia alba","SPIRE"
"Parazoanthus monostichus","ROOPNARINE"
"Verongula ardia","ROOPNARINE"
"Mylothris sulphurea","JRFerrisParisButterflies"
"Ecdyonuridae","SPIRE"
"Clio acicula","ROOPNARINE"
"Catasticta hegemon","JRFerrisParisButterflies"
"Coralliophila caribbaea","ROOPNARINE"
"Parycyathus defilippi","ROOPNARINE"
"Conorbulina","ROOPNARINE"
"Spheciosponia vesparium","ROOPNARINE"
"Caryophyllia flos","ROOPNARINE"
"Oncaea meditteranea","ROOPNARINE"
"Theridion ovatum","SPIRE"
"Urophysis chuss","BARNES"
"Aegires oritzi","ROOPNARINE"
"Catasticta bithys","JRFerrisParisButterflies"
"Mycetophyllia lamarckana","ROOPNARINE"
"Turbo caillettii","ROOPNARINE"
"Mylothris ruandana","JRFerrisParisButterflies"
"Cymphoma mcgintyi","ROOPNARINE"
"Cribochalina dura","ROOPNARINE"
"Red racer","SPIRE"
"cactus weevils","SPIRE"
"Haplochromis chrysonotus","SPIRE"
"Mithrax sculptus","ROOPNARINE"
"S. enflata","ROOPNARINE"
"Free bacteria in water column/DOC","SPIRE"
"Protopalythoa fusca","ROOPNARINE"
"bacteria/protozoa","SPIRE"
"carnivores","SPIRE"
"Limicina","ROOPNARINE"
"Hexatomini","SPIRE"
"Oculina valenciennesii","ROOPNARINE"
"Litopeneaus setiferus","akinMadIsland"
"Mithrax caribbaeus","ROOPNARINE"
"Alligator","SPIRE"
"Homoptera","BIO_INFO"
"Oligoceras violacea","ROOPNARINE"
"Exochonella antillea","ROOPNARINE"
"Eriopterini","SPIRE"
"Mylothris ochracea","JRFerrisParisButterflies"
"Myiatropa","SPIRE"
"fox","SPIRE"
"Cypraeacassis testiculus","ROOPNARINE"
"decomposers/microfauna","SPIRE"
"Mathania carrizoi","JRFerrisParisButterflies"
"Cambarus propinquus","SPIRE"
"Synalpheus pandionensis","ROOPNARINE"
"Trichopria","SPIRE"
"Lutjanus mahagoni","ROOPNARINE"
"Zoanthus flosmarinus","ROOPNARINE"
"Vellidae","SPIRE"
"limpets","SPIRE"
"Tubastrea tenuilamellosa","ROOPNARINE"
"Sciurognathi","SPIRE"
"Mylothris spica","JRFerrisParisButterflies"
"Medusae","SPIRE"
"Helmidae","SPIRE"
"Hesperocharis leucanta","JRFerrisParisButterflies"
"Chorizopora brongniarti","ROOPNARINE"
"NomenNescio","SPIRE"
"roach","SPIRE"
"Daphnia rosea","SPIRE"
"Corycaeus amazonicu","ROOPNARINE"
"Mithrax coryphe","ROOPNARINE"
"Pitho iherminieri","ROOPNARINE"
"G.","SPIRE"
"Geosargus cuprarius","SPIRE"
"ciliates","SPIRE"
"Synalpheus fritzmulleri","ROOPNARINE"
"Mylothris nubila","JRFerrisParisButterflies"
"Bracyscelus crusculum","ROOPNARINE"
"Caracal","SPIRE"
"Cliona laticovicola","ROOPNARINE"
"Parapinnixa bouvier","ROOPNARINE"
"salakka","SPIRE"
"Platydoris augustipes","ROOPNARINE"
"Mithrax ruber","ROOPNARINE"
"Bison","SPIRE"
"Tritonopsis frydis","ROOPNARINE"
"Microctonus aethiops/secalis","SPIRE"
"Pseudocertina crassa","ROOPNARINE"
"Mylothris rueppellii","JRFerrisParisButterflies"
"Hesperocharis anguitia","JRFerrisParisButterflies"
"Spheciosponia cuspidifera","ROOPNARINE"
"Petrolishtes galathinus","ROOPNARINE"
"Mylothris talboti","JRFerrisParisButterflies"
"Farfantepeneaus aztecus","akinMadIsland"
"Lithopoma caelata","ROOPNARINE"
"Aka brevitubulatum","ROOPNARINE"
"Melete salacia","JRFerrisParisButterflies"
"Paroxyethira eatoni/hintoni","SPIRE"
"Hesperocharis paranensis","JRFerrisParisButterflies"
"Pseudotropheus zebra","SPIRE"
"bleak","SPIRE"
"Diplodus caudimaculata","ROOPNARINE"
"Mylothris kiwuensis","JRFerrisParisButterflies"
"Phaenicia sericata","SPIRE"
"Drepanophora tuberculatum","ROOPNARINE"
"Collisella pustulata","ROOPNARINE"
"Rotatoria","SPIRE"
"Goniaulax tamarensis","ROOPNARINE"
"Mithrax cinctimanus","ROOPNARINE"
"Agathis","SPIRE"
"detritivore","SPIRE"
"slime molds","SPIRE"
"caplin","SPIRE"
"Verongia gigantea","ROOPNARINE"
"Priomis","ROOPNARINE"
"Collisella jamaicensis","ROOPNARINE"
"Lithopoma tecta","ROOPNARINE"
"insectivores","SPIRE"
"Pitar fulminata","ROOPNARINE"
"Spilogale putorius gracilis","SPIRE"
"Crepidocantha setigera","ROOPNARINE"
"Krohniita subtilis","ROOPNARINE"
"Nemertines","SPIRE"
"Mylothris kilimensis","JRFerrisParisButterflies"
"Colpophyliia amaranthus","ROOPNARINE"
"Crocethia alba","SPIRE"
"Parazoanthus monostichus","ROOPNARINE"
"Verongula ardia","ROOPNARINE"
"Mylothris sulphurea","JRFerrisParisButterflies"
"Ecdyonuridae","SPIRE"
"Clio acicula","ROOPNARINE"
"Catasticta hegemon","JRFerrisParisButterflies"
"Coralliophila caribbaea","ROOPNARINE"
"Parycyathus defilippi","ROOPNARINE"
"Conorbulina","ROOPNARINE"
"Spheciosponia vesparium","ROOPNARINE"
"Caryophyllia flos","ROOPNARINE"
"Oncaea meditteranea","ROOPNARINE"
"Theridion ovatum","SPIRE"
"Urophysis chuss","BARNES"
"Aegires oritzi","ROOPNARINE"
"Catasticta bithys","JRFerrisParisButterflies"
"Mycetophyllia lamarckana","ROOPNARINE"
"Turbo caillettii","ROOPNARINE"
"Mylothris ruandana","JRFerrisParisButterflies"
"Cymphoma mcgintyi","ROOPNARINE"
"Cribochalina dura","ROOPNARINE"
"Red racer","SPIRE"
"cactus weevils","SPIRE"
"Haplochromis chrysonotus","SPIRE"
"Mithrax sculptus","ROOPNARINE"
"S. enflata","ROOPNARINE"
"Free bacteria in water column/DOC","SPIRE"
"Protopalythoa fusca","ROOPNARINE"
"bacteria/protozoa","SPIRE"
"carnivores","SPIRE"
"Limicina","ROOPNARINE"
"Hexatomini","SPIRE"
"Oculina valenciennesii","ROOPNARINE"
"Litopeneaus setiferus","akinMadIsland"
"Mithrax caribbaeus","ROOPNARINE"
"Alligator","SPIRE"
"Homoptera","BIO_INFO"
"Oligoceras violacea","ROOPNARINE"
"Exochonella antillea","ROOPNARINE"
"Eriopterini","SPIRE"
"Mylothris ochracea","JRFerrisParisButterflies"
"Myiatropa","SPIRE"
"fox","SPIRE"
"Cypraeacassis testiculus","ROOPNARINE"
"decomposers/microfauna","SPIRE"
"Mathania carrizoi","JRFerrisParisButterflies"
"Cambarus propinquus","SPIRE"
"Synalpheus pandionensis","ROOPNARINE"
"Trichopria","SPIRE"
"Lutjanus mahagoni","ROOPNARINE"
"Zoanthus flosmarinus","ROOPNARINE"
"Vellidae","SPIRE"
"limpets","SPIRE"
"Tubastrea tenuilamellosa","ROOPNARINE"
"Sciurognathi","SPIRE"
"Mylothris spica","JRFerrisParisButterflies"
"Medusae","SPIRE"
"Helmidae","SPIRE"
"Hesperocharis leucanta","JRFerrisParisButterflies"
"Chorizopora brongniarti","ROOPNARINE"
"NomenNescio","SPIRE"
"roach","SPIRE"
"Daphnia rosea","SPIRE"
"Corycaeus amazonicu","ROOPNARINE"
"Mithrax coryphe","ROOPNARINE"
"Pitho iherminieri","ROOPNARINE"
"G.","SPIRE"
"Geosargus cuprarius","SPIRE"
"ciliates","SPIRE"
"Synalpheus fritzmulleri","ROOPNARINE"
"Mylothris nubila","JRFerrisParisButterflies"
"Bracyscelus crusculum","ROOPNARINE"
"Caracal","SPIRE"
"Cliona laticovicola","ROOPNARINE"
"Parapinnixa bouvier","ROOPNARINE"
"salakka","SPIRE"
"Platydoris augustipes","ROOPNARINE"
"Mithrax ruber","ROOPNARINE"
"Bison","SPIRE"
"Tritonopsis frydis","ROOPNARINE"
"Microctonus aethiops/secalis","SPIRE"
"Pseudocertina crassa","ROOPNARINE"
"Mylothris rueppellii","JRFerrisParisButterflies"
"Hesperocharis anguitia","JRFerrisParisButterflies"
"Spheciosponia cuspidifera","ROOPNARINE"
"Petrolishtes galathinus","ROOPNARINE"
"Mylothris talboti","JRFerrisParisButterflies"
"Farfantepeneaus aztecus","akinMadIsland"
"Lithopoma caelata","ROOPNARINE"
"Aka brevitubulatum","ROOPNARINE"
"Melete salacia","JRFerrisParisButterflies"
"Paroxyethira eatoni/hintoni","SPIRE"
"Hesperocharis paranensis","JRFerrisParisButterflies"
"Pseudotropheus zebra","SPIRE"
"bleak","SPIRE"
"Diplodus caudimaculata","ROOPNARINE"
"Mylothris kiwuensis","JRFerrisParisButterflies"
"Phaenicia sericata","SPIRE"
"Drepanophora tuberculatum","ROOPNARINE"
"Collisella pustulata","ROOPNARINE"
"Rotatoria","SPIRE"
"Goniaulax tamarensis","ROOPNARINE"
"Mithrax cinctimanus","ROOPNARINE"
"Agathis","SPIRE"
"detritivore","SPIRE"
"slime molds","SPIRE"
"caplin","SPIRE"
"Verongia gigantea","ROOPNARINE"
"Priomis","ROOPNARINE"
"Collisella jamaicensis","ROOPNARINE"
"Lithopoma tecta","ROOPNARINE"
"insectivores","SPIRE"
"Pitar fulminata","ROOPNARINE"
"Spilogale putorius gracilis","SPIRE"
"Crepidocantha setigera","ROOPNARINE"
"Krohniita subtilis","ROOPNARINE"
"Nemertines","SPIRE"
"Mylothris kilimensis","JRFerrisParisButterflies"
"Colpophyliia amaranthus","ROOPNARINE"
"Crocethia alba","SPIRE"
"Parazoanthus monostichus","ROOPNARINE"
"Verongula ardia","ROOPNARINE"
"Mylothris sulphurea","JRFerrisParisButterflies"
"Ecdyonuridae","SPIRE"
"Clio acicula","ROOPNARINE"
"Catasticta hegemon","JRFerrisParisButterflies"
"Coralliophila caribbaea","ROOPNARINE"
"Parycyathus defilippi","ROOPNARINE"
"Conorbulina","ROOPNARINE"
"Spheciosponia vesparium","ROOPNARINE"
"Caryophyllia flos","ROOPNARINE"
"Oncaea meditteranea","ROOPNARINE"
"Theridion ovatum","SPIRE"
"Urophysis chuss","BARNES"
"Aegires oritzi","ROOPNARINE"
"Catasticta bithys","JRFerrisParisButterflies"
"Mycetophyllia lamarckana","ROOPNARINE"
"Turbo caillettii","ROOPNARINE"
"Mylothris ruandana","JRFerrisParisButterflies"
"Cymphoma mcgintyi","ROOPNARINE"
"Cribochalina dura","ROOPNARINE"
"Red racer","SPIRE"
"cactus weevils","SPIRE"
"Haplochromis chrysonotus","SPIRE"
"Mithrax sculptus","ROOPNARINE"
"S. enflata","ROOPNARINE"
"Free bacteria in water column/DOC","SPIRE"
"Protopalythoa fusca","ROOPNARINE"
"bacteria/protozoa","SPIRE"
"carnivores","SPIRE"
"Limicina","ROOPNARINE"
"Hexatomini","SPIRE"
"Oculina valenciennesii","ROOPNARINE"
"Litopeneaus setiferus","akinMadIsland"
"Mithrax caribbaeus","ROOPNARINE"
"Alligator","SPIRE"
"Homoptera","BIO_INFO"
"Oligoceras violacea","ROOPNARINE"
"Exochonella antillea","ROOPNARINE"
"Eriopterini","SPIRE"
"Mylothris ochracea","JRFerrisParisButterflies"
"Myiatropa","SPIRE"
"fox","SPIRE"
"Cypraeacassis testiculus","ROOPNARINE"
"decomposers/microfauna","SPIRE"
"Mathania carrizoi","JRFerrisParisButterflies"
"Cambarus propinquus","SPIRE"
"Synalpheus pandionensis","ROOPNARINE"
"Trichopria","SPIRE"
"Lutjanus mahagoni","ROOPNARINE"
"Zoanthus flosmarinus","ROOPNARINE"
"Vellidae","SPIRE"
"limpets","SPIRE"
"Tubastrea tenuilamellosa","ROOPNARINE"
"Sciurognathi","SPIRE"
"Mylothris spica","JRFerrisParisButterflies"
"Medusae","SPIRE"
"Helmidae","SPIRE"
"Hesperocharis leucanta","JRFerrisParisButterflies"
"Chorizopora brongniarti","ROOPNARINE"
"NomenNescio","SPIRE"
"roach","SPIRE"
"Daphnia rosea","SPIRE"
"Corycaeus amazonicu","ROOPNARINE"
"Mithrax coryphe","ROOPNARINE"
"Pitho iherminieri","ROOPNARINE"
"G.","SPIRE"
"Geosargus cuprarius","SPIRE"
"ciliates","SPIRE"
"Synalpheus fritzmulleri","ROOPNARINE"
"Mylothris nubila","JRFerrisParisButterflies"
"Bracyscelus crusculum","ROOPNARINE"
"Caracal","SPIRE"
"Cliona laticovicola","ROOPNARINE"
"Parapinnixa bouvier","ROOPNARINE"
"salakka","SPIRE"
"Platydoris augustipes","ROOPNARINE"
"Mithrax ruber","ROOPNARINE"
"Bison","SPIRE"
"Tritonopsis frydis","ROOPNARINE"
"Microctonus aethiops/secalis","SPIRE"
"Pseudocertina crassa","ROOPNARINE"
"Mylothris rueppellii","JRFerrisParisButterflies"
"Hesperocharis anguitia","JRFerrisParisButterflies"
"Spheciosponia cuspidifera","ROOPNARINE"
"Petrolishtes galathinus","ROOPNARINE"
"Mylothris talboti","JRFerrisParisButterflies"
"Farfantepeneaus aztecus","akinMadIsland"
"Lithopoma caelata","ROOPNARINE"
"Aka brevitubulatum","ROOPNARINE"
"Melete salacia","JRFerrisParisButterflies"
"Paroxyethira eatoni/hintoni","SPIRE"
"Hesperocharis paranensis","JRFerrisParisButterflies"
"Pseudotropheus zebra","SPIRE"
"bleak","SPIRE"
"Diplodus caudimaculata","ROOPNARINE"
"Mylothris kiwuensis","JRFerrisParisButterflies"
"Phaenicia sericata","SPIRE"
"Drepanophora tuberculatum","ROOPNARINE"
"Collisella pustulata","ROOPNARINE"
"Rotatoria","SPIRE"
"Goniaulax tamarensis","ROOPNARINE"
"Mithrax cinctimanus","ROOPNARINE"
"Agathis","SPIRE"
"detritivore","SPIRE"
"slime molds","SPIRE"
"caplin","SPIRE"
"Verongia gigantea","ROOPNARINE"
"Priomis","ROOPNARINE"
"Collisella jamaicensis","ROOPNARINE"
"Lithopoma tecta","ROOPNARINE"
"insectivores","SPIRE"
"Pitar fulminata","ROOPNARINE"
"Spilogale putorius gracilis","SPIRE"
"Crepidocantha setigera","ROOPNARINE"
"Krohniita subtilis","ROOPNARINE"
"Nemertines","SPIRE"
"Mylothris kilimensis","JRFerrisParisButterflies"
"Colpophyliia amaranthus","ROOPNARINE"
"Crocethia alba","SPIRE"
"Parazoanthus monostichus","ROOPNARINE"
"Verongula ardia","ROOPNARINE"
"Mylothris sulphurea","JRFerrisParisButterflies"
"Ecdyonuridae","SPIRE"
"Clio acicula","ROOPNARINE"
"Catasticta hegemon","JRFerrisParisButterflies"
"Coralliophila caribbaea","ROOPNARINE"
"Parycyathus defilippi","ROOPNARINE"
"Conorbulina","ROOPNARINE"
"Spheciosponia vesparium","ROOPNARINE"
"Caryophyllia flos","ROOPNARINE"
"Oncaea meditteranea","ROOPNARINE"
"Theridion ovatum","SPIRE"
"Urophysis chuss","BARNES"
"Aegires oritzi","ROOPNARINE"
"Catasticta bithys","JRFerrisParisButterflies"
"Mycetophyllia lamarckana","ROOPNARINE"
"Turbo caillettii","ROOPNARINE"
"Mylothris ruandana","JRFerrisParisButterflies"
"Cymphoma mcgintyi","ROOPNARINE"
"Cribochalina dura","ROOPNARINE"
"Red racer","SPIRE"
"cactus weevils","SPIRE"
"Haplochromis chrysonotus","SPIRE"
"Mithrax sculptus","ROOPNARINE"
"S. enflata","ROOPNARINE"
"Free bacteria in water column/DOC","SPIRE"
"Protopalythoa fusca","ROOPNARINE"
"bacteria/protozoa","SPIRE"
"carnivores","SPIRE"
"Limicina","ROOPNARINE"
"Hexatomini","SPIRE"
"Oculina valenciennesii","ROOPNARINE"
"Litopeneaus setiferus","akinMadIsland"
"Mithrax caribbaeus","ROOPNARINE"
"Alligator","SPIRE"
"Homoptera","BIO_INFO"
"Oligoceras violacea","ROOPNARINE"
"Exochonella antillea","ROOPNARINE"
"Eriopterini","SPIRE"
"Mylothris ochracea","JRFerrisParisButterflies"
"Myiatropa","SPIRE"
"fox","SPIRE"
"Cypraeacassis testiculus","ROOPNARINE"
"decomposers/microfauna","SPIRE"
"Mathania carrizoi","JRFerrisParisButterflies"
"Cambarus propinquus","SPIRE"
"Synalpheus pandionensis","ROOPNARINE"
"Trichopria","SPIRE"
"Lutjanus mahagoni","ROOPNARINE"
"Zoanthus flosmarinus","ROOPNARINE"
"Vellidae","SPIRE"
"limpets","SPIRE"
"Tubastrea tenuilamellosa","ROOPNARINE"
"Sciurognathi","SPIRE"
"Mylothris spica","JRFerrisParisButterflies"
"Medusae","SPIRE"
"Helmidae","SPIRE"
"Hesperocharis leucanta","JRFerrisParisButterflies"
"Chorizopora brongniarti","ROOPNARINE"
"NomenNescio","SPIRE"
"roach","SPIRE"
"Daphnia rosea","SPIRE"
"Corycaeus amazonicu","ROOPNARINE"
"Mithrax coryphe","ROOPNARINE"
"Pitho iherminieri","ROOPNARINE"
"G.","SPIRE"
"Geosargus cuprarius","SPIRE"
"ciliates","SPIRE"
"Synalpheus fritzmulleri","ROOPNARINE"
"Mylothris nubila","JRFerrisParisButterflies"
"Bracyscelus crusculum","ROOPNARINE"
"Caracal","SPIRE"
"Cliona laticovicola","ROOPNARINE"
"Parapinnixa bouvier","ROOPNARINE"
"salakka","SPIRE"
"Platydoris augustipes","ROOPNARINE"
"Mithrax ruber","ROOPNARINE"
"Bison","SPIRE"
"Tritonopsis frydis","ROOPNARINE"
"Microctonus aethiops/secalis","SPIRE"
"Pseudocertina crassa","ROOPNARINE"
"Mylothris rueppellii","JRFerrisParisButterflies"
"Hesperocharis anguitia","JRFerrisParisButterflies"
"Spheciosponia cuspidifera","ROOPNARINE"
"Petrolishtes galathinus","ROOPNARINE"
"Mylothris talboti","JRFerrisParisButterflies"
"Farfantepeneaus aztecus","akinMadIsland"
"Lithopoma caelata","ROOPNARINE"
"Aka brevitubulatum","ROOPNARINE"
"Melete salacia","JRFerrisParisButterflies"
"Paroxyethira eatoni/hintoni","SPIRE"
"Hesperocharis paranensis","JRFerrisParisButterflies"
"Pseudotropheus zebra","SPIRE"
"bleak","SPIRE"
"Diplodus caudimaculata","ROOPNARINE"
"Mylothris kiwuensis","JRFerrisParisButterflies"
"Phaenicia sericata","SPIRE"
"Drepanophora tuberculatum","ROOPNARINE"
"Collisella pustulata","ROOPNARINE"
"Rotatoria","SPIRE"
"Goniaulax tamarensis","ROOPNARINE"
"Mithrax cinctimanus","ROOPNARINE"
"Agathis","SPIRE"
"detritivore","SPIRE"
"slime molds","SPIRE"
"caplin","SPIRE"
"Verongia gigantea","ROOPNARINE"
"Priomis","ROOPNARINE"

species interactions with a "general" locale are coded at (lat,lng)=(0, 0) which seems like the Southern Atlantic

Selecting all locations with (lat,lng) = (0,0) resulted interaction in the following SPIRE datasets:

"Landry, A review of i...e13f9b4824a43be1044f2b8c3048409f"  "SPIRE"
"Animal Diversity Web756312ea19e09816008252921e67441a"  "SPIRE"
"Morley, Personal comm...05d291380f5630faeb0c282529b819df"  "SPIRE"
"Parin, Ichthyofauna o...5310163315bcbeb17a081babb9188ae2"  "SPIRE"
"Hurlbert, Mulla, and ...11638cf0393d74795f6befac53237ca1"  "SPIRE"

Using query: http://trophicgraph.com:7474/webadmin/#/data/search/START%20location%20%3D%20node%3Alocations%28%27*%3A*%27%29%0AMATCH%20location%3C-[%3ACOLLECTED_AT]-specimen%3C-[%3ACOLLECTED]-study%0AWHERE%20location.latitude%20%3D%200.0%20AND%20location.longitude%20%3D%200.0%0ARETURN%20distinct%28study.title%29%2C%20study.title/

After careful analysis it seems that the SPIRE locale Country: General; Locality: General was mapped to geonames.org term Earth (http://www.geonames.org/6295630/earth.html). This turns out to have (lat,lng) pair 0,0 which is slightly confusing because this point exists an is located in the Southern Atlantic.

Suggestion: In order to avoid confusion, the geoname term related to Earth will no longer record a location with a lat/ lng.

"Algae" is currently mapped to "Cryptophyta" need to investigate. . .

Name "Algae" is currently mapped to page id http://eol.org/pages/3353 "Cryptophyta" . Need to investigate more.

integrate occurrence datasets to highlight gaps in interaction datasets

Many species occurrence datasets are available digitally. Comparing occurrence datasets with the interaction datasets would help us to identify the gaps in the interaction datasets. In addition, we might be able to make inferences about known interactions between species across geographical locations. E.g. if Red snapper was observed eating shrimp in Gulf of Mexico, it would be likely that Red snapper also eat shrimp somewhere else the species co-exist.

examples for marine occurrence data:
http://www.iobis.org/mapper/
http://www.aquamaps.org/
http://www.fishnet2.net/index.html (museum collection)

introduce a way to display map with locations filtered by taxon name (mainly predator)

as suggested by Jim.

sparql endpoint returns 404 on retrieving SPARQL service description

reported by @cmungall

Although SPARQL queries can be issued (see http://api.globalbioticinteractions.org:3030/globi/sparql?query=SELECT+*+WHERE+{%3FX+%3FP+%3FY}+LIMIT+10&output=json&stylesheet=%2Fxml-to-html.xsl&force-accept=text%2Fplain), a request for a service description using http://api.globalbioticinteractions.org:3030/globi/sparql returns:

Error 404: Service Description: /globi/sparql
Fuseki - version 0.2.7 (Build date: 2013-05-11T22:05:51+0100)

remove duplicate taxa from darwin code archive export

add unmatched target taxa list to darwin core archive

Gap Analysis GoMexSI file format with EOL's DarwinCore export format

as discussed with @jsimons9 today :

GoMexSI might be able to leverage the DarwinCore associations export format that is proposed by EOL. The advantage would be that we'd only have to support a single export format (less work). To see whether GoMexSI can re-use the DarwinCore export format proposed by EOL, we need to make a list of missing data elements / concepts that would need to be added.

duplicate in references csv for GoMexSI dataset

I noticed some possible duplicates in references csv file for the GoMexSI datasets. Notably, reference 24d (Divita et al). Please remove duplicate entries in the reference csv file.

Ecological associations from datamining GenBank

The basic idea is that GenBank is a large repository of information beyond simply DNA sequences. Individual sequences may contain information on host-parasite relationships (see http://ispecies.blogspot.co.uk/2006/03/building-encyclopedia-of-life.html ) or dietary information (e.g., sequences from gut contents ). I explored some of this data in http://iphylo.blogspot.co.uk/2011/03/visualising-symbiome-hosts-parasites.html .

An advantage of GenBank data is that there is a clear digital identifier for the observation (the accession number of the sequence), and this is linked to a NCBI tax_id for one member of the association (the organism being sequenced). The sequence is usually (but not always) linked to one or more publications, typically with identifiers such as DOIs and PMIDs. Many recent sequences (especially DNA barcode are also georeferenced), and some will have collection date. Hence in the best case scenario we have observations located in space and time, tied to a taxon and the primary literature.

The challenge is to mine this data. The "host" field is free-form, so people populate it with all sorts of strings, ranging from scientific names to common names, patient codes, etc. The nature of the ecological relationship can be tricky to infer as well. However, it's a potential gold mine.

I'm working with a local copy of Genbank sequence metadata for animals as par tof another project (http://bionames.org), and am interested in cleaning and mining this and extracting ecological associations. It's not clear to me what sort of data format Globi wants, and what level of detail you're after. Suggestions welcome.

use GloBI interaction ontology with GloBI interaction data to populate owl export

using results of #5 , create an owl export of the GloBI interaction data such that the data can be imported in tools such as protege, 4store, virtuoso and the like.

enable a interaction search by specific taxonomic rank (e.g. genus)

Example question: What are all prey items of Shark species where the prey items are recorded on their level.

For example, let's say that the shark Shark (Elasmobranchii) species blacktip shark (Carcharhinus limbatus) feeds on hardhead catfish (Ariopsis felis) and Animals, I'd have a way to only list the genus level prey items like (Ariopsis) and exclude higher taxa like animals.

Species interaction type searches now use interaction vocabulary, do we need an actual ontology?

At the time of writing (May 14, 2013), GloBI is modeling interactions in a basic way. The following interaction types are used: PREYS_UPON, PARASITE_OF, HAS_HOST, INTERACTS_WITH, HOST_OF, POLLINATES, PERCHING_ON, ATE .

In order to answer questions like: "Which species does Homo sapiens any kind of interact with?" we now have to list all interactions in the query. It works, but feels a bit clunky. Kindly suggest a way to model the interaction type that allows for answering interaction questions in a more natural way.

duplicate taxon names in taxon index

Steps to reproduce:

1. go to http://eol-globi.github.io
2. enter "hardhead catfish"

Expected: only single entry of Ariopsis felis.

Actual: two entries of Ariopsis felis.

geo API suggestions

there are some standard geo API patterns here http://www.opensearch.org/Specifications/OpenSearch/Extensions/Geo/1.0/Draft_2

e.g. instead of &nw_lat=29.3&nw_lng=-97.0&se_lat=26.3&se_lng=96.1 you can do &bbox=-74.0667,40.69418,-73.9116,40.7722

also a geojson response would be awesome! having to manually combine columns with data is annoying

Adding habitat, location, and compiler info for SPIRE data

The latest SPIRE data EOL has from you seems to have links to some but not all of the rich information available for each link. You may want to look at the application we built at U Maryland that used all of these data to see all the facets that are available for each link:
http://www.cs.umd.edu/hcil/biodiversity/#EcoLens
(the application only runs on Windows machines and I don't have easy access to that now, nor do I know if it currently works)

In any case here are the metadata elements that should be available and that I would ask you to add to your repository and to the resource file for EOL. For example, Eats Mollusks here has no additional metadata other than "SPIRE" on this page http://eol.org/pages/328615/data

For each relationship between two taxa there should be:
A bibliographic reference for the study whence the data originally came (except ADW -- I think you often but perhaps don't always have this -- if it is ADW the reference can be Myers, P., R. Espinosa, C. S. Parr, T. Jones, G. S. Hammond, and T. A. Dewey. 2013. The Animal Diversity Web (online). Accessed at http://animaldiversity.org.)
A "compiler" which is the metastudy where I got the info (ADW is an example of a compiler -- EOL can handle this attribution role if GLoBI can)
A year that the data were collected (or published, I'm not totally sure)
A country (they all have at least this)
A state (where relevant)
A locality (where known)
A habitat (from a controlled vocabulary -- see the panel on the left side of http://www.cs.umd.edu/hcil/biodiversity/images/ecoLens.png)

It would be ideal to have these as metadata for the links you are storing, because we are already getting people who are interested in looking at spatial (and potentially temporal) variation. The links from SPIRE are not linked to specific specimen or observation records but there is enough metadata to assist in queries having to do with location or habitat.

If you cannot find these data in the DB tables you have been working with let me know and I'll email a ZIP file with text tables.

Also, at some point we will want to remove the ADW links from the SPIRE resource and get them directly from ADW because they've undoubtedly improved over the last eight years or so. That can be a separate ticket.

Atlantic Herring (Clupea Harengus) unlikely to eat Norway Pout (Trisopterus esmarkii) perhaps larvae?

Found at http://eol-globi.github.io when searching for Atlantic Herring.