Comments (3)
jhpoelen
commented on June 15, 2024
using
unzip -p review-report.zip index.jatsproduced:
<?xml version="1.0" encoding="utf-8" ?>
<!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Archiving and Interchange DTD v1.2 20190208//EN"
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<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" dtd-version="1.2" article-type="other">
<front>
<journal-meta>
<journal-id></journal-id>
<journal-title-group>
</journal-title-group>
<issn></issn>
<publisher>
<publisher-name></publisher-name>
</publisher>
</journal-meta>
<article-meta>
<title-group>
<article-title>A Review of Biotic Interactions Found in
globalbioticinteractions/template-dataset</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<string-name>By Nomer and Elton, two naive review bots.</string-name>
</contrib>
</contrib-group>
<pub-date date-type="pub" publication-format="electronic" iso-8601-date="2023-08-24">
<day>24</day>
<month>8</month>
<year>2023</year>
</pub-date>
<permissions>
</permissions>
<abstract>
<p>Life on earth is sustained by complex interactions between organisms
and their environment. These biotic interactions can be captured in
datasets and published digitally. We describe a review process of such
an openly accessible digital interaction datasets of known origin, and
discuss their outcome. The dataset under review (aka
globalbioticinteractions/template-dataset) contains 11 interactions with
1 (e.g., parasiteOf) unique types of associations between 8 primary taxa
(e.g., Leptoconchus inpleuractis) and 11 associated taxa (e.g., Fungia
(Cycloseris) costulata). The report includes detailed summaries of
interactions data as well as a taxonomic review from multiple
perspectives.</p>
</abstract>
</article-meta>
</front>
<body>
<sec id="introduction">
<title>Introduction</title>
<p>Data review can be a time consuming process, especially when done
manually. This review report aims to help facilitate data review of
species interaction claims made in datasets registered with Global
Biotic Interactions (Poelen, Simons, and Mungall 2014). The review
includes summary statistics of, and observations about, the dataset
under review:</p>
<preformat>Jorrit H. Poelen. 2014. Species associations manually extracted from literature. file:///home/runner/work/template-dataset/template-dataset/./ </preformat>
</sec>
<sec id="methods">
<title>Methods</title>
<p>The review is performed through programmatic scripts that leverage
tools like Preston, Elton, Nomer combined with third-party tools like
grep, mlr, tail and head.</p>
<table-wrap>
<caption>
<p>Tools used in this review process</p>
</caption>
<table>
<colgroup>
<col width="50%" />
<col width="50%" />
</colgroup>
<thead>
<tr>
<th>tool name</th>
<th>version</th>
</tr>
</thead>
<tbody>
<tr>
<td><ext-link ext-link-type="uri" xlink:href="httpsmisc://github.com/globalbioticinteractions/elton">elton</ext-link></td>
<td>0.12.7</td>
</tr>
<tr>
<td><ext-link ext-link-type="uri" xlink:href="https://github.com/globalbioticinteractions/nomer">nomer</ext-link></td>
<td>0.5.0</td>
</tr>
<tr>
<td><ext-link ext-link-type="uri" xlink:href="https://miller.readthedocs.io/en/6.8.0/">mlr</ext-link></td>
<td>6.0.0</td>
</tr>
<tr>
<td><ext-link ext-link-type="uri" xlink:href="https://pandoc.org/">pandoc</ext-link></td>
<td>3.1.6.1</td>
</tr>
</tbody>
</table>
</table-wrap>
<p>The review process can be described in the form of a script:</p>
<preformat># get versioned copy of the dataset under review
elton pull globalbioticinteractions/template-dataset
# generate review notes
elton review globalbioticinteractions/template-dataset\
> review.tsv
# export indexed interaction records
elton interactions globalbioticinteractions/template-dataset\
> interactions.tsv
# export names and align them with the Catalogue of Life using Nomer
elton names globalbioticinteractions/template-dataset\
| nomer append col\
> name-alignment.tsv</preformat>
<p>or visually, in a process diagram.</p>
<fig>
<caption><p>Review Process Overview</p></caption>
<graphic mimetype="image" mime-subtype="svg+xml" xlink:href="process.svg" />
</fig>
<p>You can find a recent copy of the full review script at
<ext-link ext-link-type="uri" xlink:href="https://github.com/globalbioticinteractions/globinizer/blob/master/check-dataset.sh">check-data.sh</ext-link>.</p>
</sec>
<sec id="results">
<title>Results</title>
<p>In the following sections, the results of the review are summarized
<xref ref-type="fn" rid="fn1">1</xref>. Then, links to the detailed
review reports are provided.</p>
<sec id="biotic-interactions">
<title>Biotic Interactions</title>
<fig>
<caption><p>Biotic Interaction Data Model</p></caption>
<graphic mimetype="image" mime-subtype="svg+xml" xlink:href="interaction.svg" />
</fig>
<p>In this review, biotic interactions (or biotic associations) are
modeled as a primary (aka subject, source) organism interacting with
an associate (aka object, target) organism. The dataset under review
classified the primary/associate organisms with specific taxa. The
primary and associate organisms The kind of interaction is
documented as an interaction type.</p>
<p>The dataset under review (aka
globalbioticinteractions/template-dataset) contains 11 interactions
with 1 (e.g., parasiteOf) unique types of associations between 8
primary taxa (e.g., Leptoconchus inpleuractis) and 11 associated
taxa (e.g., Fungia (Cycloseris) costulata).</p>
<table-wrap>
<caption>
<p>Sample of Indexed Interaction Claims</p>
</caption>
<table>
<colgroup>
<col width="25%" />
<col width="25%" />
<col width="25%" />
<col width="25%" />
</colgroup>
<thead>
<tr>
<th>sourceTaxonName</th>
<th>interactionTypeName</th>
<th>targetTaxonName</th>
<th>referenceCitation</th>
</tr>
</thead>
<tbody>
<tr>
<td>Leptoconchus incycloseris</td>
<td>parasiteOf</td>
<td>Fungia (Cycloseris) costulata</td>
<td>Gittenberger, A., Gittenberger, E. (2011). Cryptic,
adaptive radiation of endoparasitic snails: sibling species
of Leptoconchus (Gastropoda: Coralliophilidae) in corals.
Org Divers Evol, 11(1), 21–41.
doi:10.1007/s13127-011-0039-1</td>
</tr>
<tr>
<td>Leptoconchus infungites</td>
<td>parasiteOf</td>
<td>Fungia (Fungia) fungites</td>
<td>Gittenberger, A., Gittenberger, E. (2011). Cryptic,
adaptive radiation of endoparasitic snails: sibling species
of Leptoconchus (Gastropoda: Coralliophilidae) in corals.
Org Divers Evol, 11(1), 21–41.
doi:10.1007/s13127-011-0039-1</td>
</tr>
<tr>
<td>Leptoconchus ingrandifungi</td>
<td>parasiteOf</td>
<td>Sandalolitha dentata</td>
<td>Gittenberger, A., Gittenberger, E. (2011). Cryptic,
adaptive radiation of endoparasitic snails: sibling species
of Leptoconchus (Gastropoda: Coralliophilidae) in corals.
Org Divers Evol, 11(1), 21–41.
doi:10.1007/s13127-011-0039-1</td>
</tr>
<tr>
<td>Leptoconchus ingranulosa</td>
<td>parasiteOf</td>
<td>Fungia (Wellsofungia) granulosa</td>
<td>Gittenberger, A., Gittenberger, E. (2011). Cryptic,
adaptive radiation of endoparasitic snails: sibling species
of Leptoconchus (Gastropoda: Coralliophilidae) in corals.
Org Divers Evol, 11(1), 21–41.
doi:10.1007/s13127-011-0039-1</td>
</tr>
</tbody>
</table>
</table-wrap>
<p>An exhaustive list of indexed interaction claims can be found at
<ext-link ext-link-type="uri" xlink:href="indexed-interactions.html">indexed-interactions</ext-link>
(<ext-link ext-link-type="uri" xlink:href="indexed-interactions.csv">csv</ext-link>/<ext-link ext-link-type="uri" xlink:href="indexed-interactions.tsv">tsv</ext-link>/<ext-link ext-link-type="uri" xlink:href="indexed-interactions.html">html</ext-link>).</p>
<table-wrap>
<caption>
<p>Most Frequently Mentioned Interaction Types</p>
</caption>
<table>
<thead>
<tr>
<th>interactionTypeName</th>
<th>count</th>
</tr>
</thead>
<tbody>
<tr>
<td>parasiteOf</td>
<td>11</td>
</tr>
</tbody>
</table>
</table-wrap>
<table-wrap>
<caption>
<p>Most Frequently Mentioned Primary Taxa</p>
</caption>
<table>
<thead>
<tr>
<th>sourceTaxonName</th>
<th>count</th>
</tr>
</thead>
<tbody>
<tr>
<td>Leptoconchus inpleuractis</td>
<td>3</td>
</tr>
<tr>
<td>Leptoconchus massini</td>
<td>2</td>
</tr>
<tr>
<td>Leptoconchus incycloseris</td>
<td>1</td>
</tr>
<tr>
<td>Leptoconchus infungites</td>
<td>1</td>
</tr>
</tbody>
</table>
</table-wrap>
<table-wrap>
<caption>
<p>Most Frequently Mentioned Associate Taxa</p>
</caption>
<table>
<thead>
<tr>
<th>targetTaxonName</th>
<th>count</th>
</tr>
</thead>
<tbody>
<tr>
<td>Fungia (Cycloseris) costulata</td>
<td>1</td>
</tr>
<tr>
<td>Fungia (Fungia) fungites</td>
<td>1</td>
</tr>
<tr>
<td>Sandalolitha dentata</td>
<td>1</td>
</tr>
<tr>
<td>Fungia (Wellsofungia) granulosa</td>
<td>1</td>
</tr>
</tbody>
</table>
</table-wrap>
<p>You can download the indexed dataset under review at
<ext-link ext-link-type="uri" xlink:href="indexed-interactions.csv">indexed-interactions.csv</ext-link>.
A tab-separated file can be found at
<ext-link ext-link-type="uri" xlink:href="indexed-interactions.tsv">indexed-interactions.tsv</ext-link></p>
<p>Learn more about the structure of this download at
<ext-link ext-link-type="uri" xlink:href="https://globalbioticinteractions.org">GloBI
website</ext-link>, by opening a
<ext-link ext-link-type="uri" xlink:href="https://github.com/globalbioticinteractions/globalbioticinteractions/issues/new">GitHub
issue</ext-link>, or by sending an
<ext-link ext-link-type="uri" xlink:href="mailto:[email protected]">email</ext-link>.</p>
<p>Another way to discover the dataset under review is by searching
for it on the
<ext-link ext-link-type="uri" xlink:href="https://www.globalbioticinteractions.org/?accordingTo=globi%3Aglobalbioticinteractions%2Ftemplate-dataset">GloBI
website</ext-link>.</p>
</sec>
<sec id="taxonomic-alignment">
<title>Taxonomic Alignment</title>
<p>As part of the review, all names are aligned against various name
catalogs (e.g., col ncbi discoverlife gbif itis globi tpt). These
alignments may serve as a way to review name usage or aid in
selecting of a suitable taxonomic name resource to use.</p>
<table-wrap>
<caption>
<p>Sample of Name Alignments</p>
</caption>
<table>
<thead>
<tr>
<th>providedName</th>
<th>relationName</th>
<th>resolvedCatalogName</th>
<th>resolvedName</th>
</tr>
</thead>
<tbody>
<tr>
<td>Fungia</td>
<td>HAS_ACCEPTED_NAME</td>
<td>col</td>
<td>Fungia</td>
</tr>
<tr>
<td>Fungia</td>
<td>SAME_AS</td>
<td>ncbi</td>
<td>Fungia</td>
</tr>
<tr>
<td>Fungia</td>
<td>NONE</td>
<td>discoverlife</td>
<td>Fungia</td>
</tr>
<tr>
<td>Fungia</td>
<td>HAS_ACCEPTED_NAME</td>
<td>gbif</td>
<td>Fungia</td>
</tr>
</tbody>
</table>
</table-wrap>
<table-wrap>
<caption>
<p>Alignment types per catalog</p>
</caption>
<table>
<thead>
<tr>
<th>resolvedCatalogName</th>
<th>relationName</th>
<th>count</th>
</tr>
</thead>
<tbody>
<tr>
<td>col</td>
<td>HAS_ACCEPTED_NAME</td>
<td>12</td>
</tr>
<tr>
<td>col</td>
<td>SYNONYM_OF</td>
<td>1</td>
</tr>
<tr>
<td>discoverlife</td>
<td>NONE</td>
<td>12</td>
</tr>
<tr>
<td>gbif</td>
<td>HAS_ACCEPTED_NAME</td>
<td>12</td>
</tr>
<tr>
<td>gbif</td>
<td>SYNONYM_OF</td>
<td>1</td>
</tr>
<tr>
<td>globi</td>
<td>NONE</td>
<td>1</td>
</tr>
<tr>
<td>globi</td>
<td>SAME_AS</td>
<td>62</td>
</tr>
<tr>
<td>itis</td>
<td>HAS_ACCEPTED_NAME</td>
<td>4</td>
</tr>
<tr>
<td>itis</td>
<td>NONE</td>
<td>8</td>
</tr>
<tr>
<td>ncbi</td>
<td>SAME_AS</td>
<td>12</td>
</tr>
<tr>
<td>tpt</td>
<td>NONE</td>
<td>12</td>
</tr>
</tbody>
</table>
</table-wrap>
<table-wrap>
<caption>
<p>List of Available Name Alignment Reports</p>
</caption>
<table>
<colgroup>
<col width="50%" />
<col width="50%" />
</colgroup>
<thead>
<tr>
<th>catalog name</th>
<th>alignment results</th>
</tr>
</thead>
<tbody>
<tr>
<td>col</td>
<td><ext-link ext-link-type="uri" xlink:href="indexed-names-resolved-col.html">associated
names alignments</ext-link>
(<ext-link ext-link-type="uri" xlink:href="indexed-names-resolved-col.tsv">csv</ext-link>/<ext-link ext-link-type="uri" xlink:href="indexed-names-resolved-col.tsv">tsv</ext-link>/<ext-link ext-link-type="uri" xlink:href="indexed-names-resolved-col.html">html</ext-link>)</td>
</tr>
<tr>
<td>ncbi</td>
<td><ext-link ext-link-type="uri" xlink:href="indexed-names-resolved-ncbi.html">associated
names alignments</ext-link>
(<ext-link ext-link-type="uri" xlink:href="indexed-names-resolved-ncbi.tsv">csv</ext-link>/<ext-link ext-link-type="uri" xlink:href="indexed-names-resolved-ncbi.tsv">tsv</ext-link>/<ext-link ext-link-type="uri" xlink:href="indexed-names-resolved-ncbi.html">html</ext-link>)</td>
</tr>
<tr>
<td>discoverlife</td>
<td><ext-link ext-link-type="uri" xlink:href="indexed-names-resolved-discoverlife.html">associated
names alignments</ext-link>
(<ext-link ext-link-type="uri" xlink:href="indexed-names-resolved-discoverlife.tsv">csv</ext-link>/<ext-link ext-link-type="uri" xlink:href="indexed-names-resolved-discoverlife.tsv">tsv</ext-link>/<ext-link ext-link-type="uri" xlink:href="indexed-names-resolved-discoverlife.html">html</ext-link>)</td>
</tr>
<tr>
<td>gbif</td>
<td><ext-link ext-link-type="uri" xlink:href="indexed-names-resolved-gbif.html">associated
names alignments</ext-link>
(<ext-link ext-link-type="uri" xlink:href="indexed-names-resolved-gbif.tsv">csv</ext-link>/<ext-link ext-link-type="uri" xlink:href="indexed-names-resolved-gbif.tsv">tsv</ext-link>/<ext-link ext-link-type="uri" xlink:href="indexed-names-resolved-gbif.html">html</ext-link>)</td>
</tr>
<tr>
<td>itis</td>
<td><ext-link ext-link-type="uri" xlink:href="indexed-names-resolved-itis.html">associated
names alignments</ext-link>
(<ext-link ext-link-type="uri" xlink:href="indexed-names-resolved-itis.tsv">csv</ext-link>/<ext-link ext-link-type="uri" xlink:href="indexed-names-resolved-itis.tsv">tsv</ext-link>/<ext-link ext-link-type="uri" xlink:href="indexed-names-resolved-itis.html">html</ext-link>)</td>
</tr>
<tr>
<td>globi</td>
<td><ext-link ext-link-type="uri" xlink:href="indexed-names-resolved-globi.html">associated
names alignments</ext-link>
(<ext-link ext-link-type="uri" xlink:href="indexed-names-resolved-globi.tsv">csv</ext-link>/<ext-link ext-link-type="uri" xlink:href="indexed-names-resolved-globi.tsv">tsv</ext-link>/<ext-link ext-link-type="uri" xlink:href="indexed-names-resolved-globi.html">html</ext-link>)</td>
</tr>
<tr>
<td>tpt</td>
<td><ext-link ext-link-type="uri" xlink:href="indexed-names-resolved-tpt.html">associated
names alignments</ext-link>
(<ext-link ext-link-type="uri" xlink:href="indexed-names-resolved-tpt.tsv">csv</ext-link>/<ext-link ext-link-type="uri" xlink:href="indexed-names-resolved-tpt.tsv">tsv</ext-link>/<ext-link ext-link-type="uri" xlink:href="indexed-names-resolved-tpt.html">html</ext-link>)</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="additional-reviews">
<title>Additional Reviews</title>
<p>Elton, Nomer, and other tools may have difficulties interpreting
existing species interaction datasets. Or, they may mishave, or
otherwise show unexpected behavior. As part of the review process,
detailed review notes are kept that document possibly misbehaving,
or confused, review bots. An sample of review notes associated with
this review can be found below.</p>
<table-wrap>
<caption>
<p>First few lines in the review notes.</p>
</caption>
<table>
<colgroup>
<col width="33%" />
<col width="33%" />
<col width="33%" />
</colgroup>
<thead>
<tr>
<th>reviewDate</th>
<th>reviewCommentType</th>
<th>reviewComment</th>
</tr>
</thead>
<tbody>
<tr>
<td>2023-08-24T14:37:29Z</td>
<td>summary</td>
<td>file:///home/runner/work/template-dataset/template-dataset/./</td>
</tr>
<tr>
<td>2023-08-24T14:37:29Z</td>
<td>summary</td>
<td>11 interaction(s)</td>
</tr>
<tr>
<td>2023-08-24T14:37:29Z</td>
<td>summary</td>
<td>0 note(s)</td>
</tr>
<tr>
<td>2023-08-24T14:37:29Z</td>
<td>summary</td>
<td>11 info(s)</td>
</tr>
</tbody>
</table>
</table-wrap>
<p>In addtion, you can find the most frequently occurring notes in
the table below.</p>
<p>: Most frequently occurring review notes, if any.</p>
<p>For more exhaustive list of review notes, please have a look at
the <ext-link ext-link-type="uri" xlink:href="review.html">Review
Notes</ext-link>
(<ext-link ext-link-type="uri" xlink:href="review.csv">csv</ext-link>/<ext-link ext-link-type="uri" xlink:href="review.tsv">tsv</ext-link>/<ext-link ext-link-type="uri" xlink:href="review.html">html</ext-link>).</p>
</sec>
<sec id="review-status-badge">
<title>Review Status Badge</title>
<p>As part of the review, a review badge is generated. This review
badge can be included in webpages to indicate the review status of
the dataset under review. You can find the badge at:</p>
<p><ext-link ext-link-type="uri" xlink:href="review.svg">review.svg</ext-link></p>
<p>At time of writing, the review badge looks like:</p>
<p><ext-link ext-link-type="uri" xlink:href="index.html"><inline-graphic mimetype="image" mime-subtype="svg+xml" xlink:href="review.svg">
<alt-text>review badge</alt-text>
</inline-graphic></ext-link> .</p>
<p>Note that if the badge is green, no review notes were generated.
If the badge is yellow, the review bots may need some help with
interpreting the species interaction data.</p>
</sec>
</sec>
<sec id="discussion">
<title>Discussion</title>
<p>This review is intended to provide a perspective on the dataset to
aid understanding of species interaction claims discovered. However,
this review should <italic>not</italic> be considered as fitness of
use or other kind of quality assessment. Instead, the review may be
used as in indication of the
open-ness<xref ref-type="fn" rid="fn2">2</xref> and FAIRness
(Wilkinson et al. 2016; Trekels et al. 2023) of the dataset: in order
to perform this review, the data was likely openly available,
<bold>F</bold>indable, <bold>A</bold>ccessible,
<bold>I</bold>nteroperable and <bold>R</bold>eusable. Currently, this
Open-FAIR assessment is qualitative, and with measurement units
specified, a more quantitative approach can be implemented.</p>
</sec>
<sec id="acknowledgements">
<title>Acknowledgements</title>
<p>We thank the many humans that created us and those who created and
maintained the data, software and other intellectual resources that
were used for producing this review. In addition, we are grateful for
the natural resources providing the basis for these human and bot
activities.</p>
</sec>
</body>
<back>
<ref-list>
<title>References</title>
<ref id="ref-Poelen_2014">
<mixed-citation>Poelen, Jorrit H., James D. Simons, and Chris J.
Mungall. 2014. “Global Biotic Interactions: An Open Infrastructure
to Share and Analyze Species-Interaction Datasets.”
<italic>Ecological Informatics</italic> 24 (November): 148–59.
<ext-link ext-link-type="uri" xlink:href="https://doi.org/10.1016/j.ecoinf.2014.08.005">https://doi.org/10.1016/j.ecoinf.2014.08.005</ext-link>.</mixed-citation>
</ref>
<ref id="ref-trekels_maarten_2023_8176978">
<mixed-citation>Trekels, Maarten, Debora Pignatari Drucker, José
Augusto Salim, Jeff Ollerton, Jorrit Poelen, Filipi Miranda Soares,
Max Rünzel, Muo Kasina, Quentin Groom, and Mariano Devoto. 2023.
“<named-content content-type="nocase">WorldFAIR Project (D10.1)
Agriculture-related pollinator data standards use cases
report</named-content>.” Zenodo.
<ext-link ext-link-type="uri" xlink:href="https://doi.org/10.5281/zenodo.8176978">https://doi.org/10.5281/zenodo.8176978</ext-link>.</mixed-citation>
</ref>
<ref id="ref-Wilkinson_2016">
<mixed-citation>Wilkinson, Mark D., Michel Dumontier, IJsbrand Jan
Aalbersberg, Gabrielle Appleton, Myles Axton, Arie Baak, Niklas
Blomberg, et al. 2016. “The FAIR Guiding Principles for Scientific
Data Management and Stewardship.” <italic>Scientific Data</italic> 3
(1).
<ext-link ext-link-type="uri" xlink:href="https://doi.org/10.1038/sdata.2016.18">https://doi.org/10.1038/sdata.2016.18</ext-link>.</mixed-citation>
</ref>
</ref-list>
<fn-group>
<fn id="fn1">
<label>1</label><p>Disclaimer: The results in this review should be
considered friendly, yet naive, notes from an unsophisticated robot.
Please keep that in mind when considering the review results.</p>
</fn>
<fn id="fn2">
<label>2</label><p>According to http://opendefinition.org/: “Open
data is data that can be freely used, re-used and redistributed by
anyone - subject only, at most, to the requirement to attribute and
sharealike.”</p>
</fn>
</fn-group>
</back>
</article>from globalbioticinteractions.
jhpoelen
commented on June 15, 2024
@Daniel-Mietchen curious to hear any ideas on getting GloBI review reports expressed in jats published in RIO.
from globalbioticinteractions.
jhpoelen
commented on June 15, 2024
@Daniel-Mietchen just a ping on idea to publish GloBI reviews to RIO journal via jets review report.
from globalbioticinteractions.
Related Issues (20)
- Taxon name "Giant Tube Worm (Riftia pachyptila)" is not being suggested by query interface HOT 6
- encyclopedia of life page contains "Missing page" when linking to GloBI indexed species interaction records. HOT 3
- suggest to index virjendb https://virjendb.uni-jena.de/Downloads HOT 3
- suggest to index Zapata-Mesa, Natalya, Sebastián Montoya-Bustamante, Juliana Hoyos, Daniela Peña, Jorge Galindo-González, Julio J. Chacón-Pacheco, Jesús Ballesteros-Correa, et al. 2024. “ BatFly: A Database of Neotropical Bat–Fly Interactions.” Ecology 105(3): e4249. https://doi.org/10.1002/ecy.4249 HOT 2
- protect repo against GitHub Action Worms HOT 2
- let wikidata index WP10.3 Agricultural Biodiversity through their authors and associated pollination claims HOT 1
- show example of how WP10.3 pilot study contributes to the Encyclopedia of Life HOT 4
- suggest to index https://phdaily.info/
- suggest to index https://viralhostrangedb.pasteur.cloud
- suggest to index Moonen et al 2023 One Health: https://doi.org/10.1016/j.onehlt.2023.100490
- GloBI API server appears to be down HOT 4
- suggest to index Fetters, Andrea M., and Tia-Lynn Ashman. 2023. The pollen virome: a review of pollen-associated viruses and consequences for plants and their interactions with pollinators. American Journal of Botany 110(6): e16144. https://doi.org/10.1002/ajb2.16144
- announcement: 2024-04-18 WorldFAIR webinar series- "Reusing Plant-Pollinator Datasets: a Global Perspective with Guidelines and Recommendations inspired by Pilot Studies from Africa, the Americas and Europe".
- suggest to index Adhurya, S., Lee, D.-Y., & Park, Y.-S. (2024). KF-metaweb: A trophic metaweb of freshwater ecosystems of South Korea. Global Ecology and Biogeography, 00, e13845. https://doi.org/10.1111/geb.13845 HOT 3
- suggest to index the USDA PLANTS database HOT 1
- create review report of bee interactions in GloBI as aligned by discoverlife HOT 13
- Find interactions hidden in Arctos parts HOT 4
- review badges not appearing at https://globalbioticinteractions.org/datasets HOT 2
- neo4j down ? HOT 4
- update neo4j documentation HOT 12
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