Comments (5)
The release is now available! https://github.com/google/deepconsensus/releases/tag/v0.2.0
from deepconsensus.
Hi Andre,
Yes, we are currently working on a version of DeepConsensus which will be easier to install with pip, and this new version will also include a docker image that should work with singularity as well.
Maria
from deepconsensus.
Great to hear! Is there an estimate for when this might be available?
from deepconsensus.
Thank you @MariaNattestad . Currently, we are performing several genome assemblies, and we intend to include deepconsensus in our PcabioHifi pipeline. Do you have some time estimation for the next stable release?
André
from deepconsensus.
We're hoping to have a release ready by the end of January, assuming all goes well :)
from deepconsensus.
Related Issues (20)
- Lower number of >Q30 average quality reads for v1.1 compared to v0.3 HOT 10
- Error detecting params.json using docker in debian (10) HPC HOT 2
- Installation from source file problem HOT 2
- lower quality and less reads in deepconsensus 1.0 output compared to ccs HOT 2
- python 3.9 HOT 2
- [Repeat] Running deepconsensus results in "free(): invalid pointer" error HOT 17
- QV for each ccs reads HOT 2
- Public raw train dataset availability HOT 2
- Cannot open/create ccs.bam file? HOT 6
- vRAM limit HOT 1
- the label without alignment HOT 5
- bam or fastq issue HOT 2
- Separate subreads for mixed samples? HOT 3
- GPU installation failure with pip HOT 3
- GPU installation using quick start guide fails HOT 5
- OSError: error -3 while reading file HOT 8
- normal pass / fail rate? HOT 2
- KeyError HOT 5
- About making ground truth. HOT 2
- Optimizing runtime on HPC HOT 2
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from deepconsensus.