greco-lab/eutopia

eUTOPIA: solUTion for Omics data PreprocessIng and Analysis

eutopia's Issues

no space left on device

docker pull grecolab/eutopia
Using default tag: latest
latest: Pulling from grecolab/eutopia
a4d8138d0f6b: Pull complete
fb232e1cbf74: Pull complete
9c2e363e42ea: Pull complete
3962c7d95986: Pull complete
75c534aa90f4: Pull complete
cf434b429942: Extracting [==================================================>] 5.51GB/5.51GB
failed to register layer: ApplyLayer exit status 1 stdout: stderr: write /usr/share/texmf/fonts/type1/arphic/bsmiu/bsmiu85.pfb: no space left on device

i got this error, but my space have lot of space
$ df -h
Filesystem Size Used Avail Use% Mounted on
/dev/mapper/centos-root 50G 6.7G 44G 14% /
devtmpfs 63G 0 63G 0% /dev
tmpfs 63G 0 63G 0% /dev/shm
tmpfs 63G 81M 63G 1% /run
tmpfs 63G 0 63G 0% /sys/fs/cgroup
/dev/mapper/centos-home 434G 351G 84G 81% /home
/dev/vda1 497M 120M 378M 25% /boot
/dev/vdb 40T 35T 5.3T 87% /data
tmpfs 13G 0 13G 0% /run/user/0
/dev/mapper/vgdata-lvdata 60T 6.6T 53T 12% /data_exp
tmpfs 13G 0 13G 0% /run/user/1000

---

df -i
Filesystem Inodes IUsed IFree IUse% Mounted on
/dev/mapper/centos-root 52428800 38825 52389975 1% /
devtmpfs 16477401 517 16476884 1% /dev
tmpfs 16479810 1 16479809 1% /dev/shm
tmpfs 16479810 580 16479230 1% /run
tmpfs 16479810 13 16479797 1% /sys/fs/cgroup
/dev/mapper/centos-home 358391568 9784322 348607246 3% /home
/dev/vda1 512000 330 511670 1% /boot
/dev/vdb 8589934528 16248 8589918280 1% /data
tmpfs 16479810 1 16479809 1% /run/user/0
/dev/mapper/vgdata-lvdata 2558525248 964 2558524284 1% /data_exp
tmpfs 16479810 1 16479809 1% /run/user/1000

Can't use limma model without Covariates

Hi !

When launching the differential analysis after letting the input$coVar empty. I get the following error :

Error: "length of 'dimnames' [2] not equal to array extent.

So what if the user do not have any co-variates in his analysis ? Is it possible ? If not, is it because of unrelevant statistical analysis purposes ?

Thanks you in advance for your help !

Best,
Clément

Problems in app starting

Either try running the app from
runGitHub("eUTOPIA", "Greco-Lab", subdir="eUTOPIA-app")
or from
runUrl("https://github.com/Greco-Lab/eUTOPIA/archive/master.zip", subdir="eUTOPIA-app")
I got this error
ERROR: zero-length inputs cannot be mixed with those of non-zero length
Best