hasihays Goto Github PK

pysb

Python framework for Systems Biology modeling

pyspm

Python library to handle Scanning Probe Microscopy Images. Can read nanoscan .xml data, Bruker AFM images, Nanonis SXM files as well as iontof images(ITA, ITM and ITS).

pytcga

DEPRECATED: Store and query public TCGA data

pyth-ion

Pyth-Ion Nanopore Analysis

qsar-drugdiscovery-with-rdkit

ChEMBL Database used to create Lipinski Descriptors (ADME Pharmokinetic Profile) to use in a Random Forest Regression Model

qsar-tools

Scripts for assisting in modeling quantitative structure activity relationships from 2D chemical data

r-project-scrna-seq-clustering

Clustering of Lung cancer scRNA-seq data

rapids-single-cell-examples

Examples of single-cell genomic analysis accelerated with RAPIDS

raspa2

Classical molecular simulation code

rdata-project-manipulation

FPKM data manipulation with NCBI GEO data sets

rdkit

The official sources for the RDKit library

refinery-platform

The Refinery Platform is a data management, analysis and visualization system

ringspy

A Python automated geometric generation tool that generates 3D meshes of prismatic cellular solids with radial growth rules based on Voronoi diagrams.

rnalysis

RNA sequencing analysis pipeline

robotics_python

Robotics Mathematical modeling and theory with Python (learning through extensive numerical simulations and animations.)

rssalib

A library for stochastic simulation of complex biochemical reactions

salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

sbml-test-suite

The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML support provided in a software package.

scanpy-tutorials

Scanpy Tutorials.

scbert

scdeepcluster

scDeepCluster for Single Cell RNA-seq data

scelvis

:sparkler: SCelVis - web-based visualization of single-cell data. :arrow_right: :arrow_right: Demo :arrow_right::arrow_right:

scenicplus

SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.

scikit-learn

scikit-learn: machine learning in Python

scikit-learn-videos

Jupyter notebooks from the scikit-learn video series

scipy

SciPy library main repository

scmlnet

Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks

scnym

Semi-supervised adversarial neural networks for classification of single cell transcriptomics data

scpipe

a pipeline for single cell RNA-seq data analysis