Comments (1)
Clair3 calls variants with AF down to 0.15. It is being called a germline variant caller but that doesn't mean variants called by Clair3 have to be germline.
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Related Issues (20)
- Option to call SNPs only HOT 1
- Haplotype filtering step keep stuck HOT 4
- Training for PacBio HiFi indel calling HOT 11
- question: model for 5khz data HOT 4
- Nondeterminism in ClairS output HOT 1
- Question: comparison with DRAGEN Somatic HOT 1
- Docker latest version HOT 1
- [Ask for insights on Illumina results regarding ClairS workflow/design choices] HOT 5
- [Inquiry for train dataset generation procedure] HOT 2
- Questions Regarding Heterozygous Variants, Somatic Mutations, and Phasing in ClairS Usage HOT 4
- add v4.3.0 model for clair3 params HOT 6
- sh files for data preprocessing HOT 1
- Question in training data label generation code - get_candidates.py HOT 2
- Enhancing somatic variant calling and execution speed HOT 5
- ClairS crashing with spaces in input file name HOT 2
- tmp folders not being deleted after calling HOT 2
- ClairS quits with exit code 0 but no output, no error logged HOT 5
- Adding Normal Sample GT to the VCF file HOT 3
- samtools index: failed to open error HOT 9
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