Comments (1)
zhengzhenxian
commented on June 12, 2024
Thanks for your interest. We are still completing the whole training workflow, many validations and optimizations are still going on on our sides and with our collaborators.
We expect to be more confident before we can release the training data-generating scripts. At the moment, you might refer to the data generation procedures elaborated in ClairS' preprint.
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Related Issues (20)
- Option to call SNPs only HOT 1
- Haplotype filtering step keep stuck HOT 4
- Training for PacBio HiFi indel calling HOT 11
- question: model for 5khz data HOT 4
- Nondeterminism in ClairS output HOT 1
- Germline variants present in output.vcf HOT 1
- Question: comparison with DRAGEN Somatic HOT 1
- Docker latest version HOT 1
- [Ask for insights on Illumina results regarding ClairS workflow/design choices] HOT 5
- [Inquiry for train dataset generation procedure] HOT 2
- Questions Regarding Heterozygous Variants, Somatic Mutations, and Phasing in ClairS Usage HOT 4
- add v4.3.0 model for clair3 params HOT 6
- Question in training data label generation code - get_candidates.py HOT 2
- Enhancing somatic variant calling and execution speed HOT 5
- ClairS crashing with spaces in input file name HOT 2
- tmp folders not being deleted after calling HOT 2
- ClairS quits with exit code 0 but no output, no error logged HOT 5
- Adding Normal Sample GT to the VCF file HOT 3
- samtools index: failed to open error HOT 9
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