Comments (2)
Hi, Rowan,
Thanks so much for reporting the issue. We have fixed the bug and please try to re-pull the docker image(You might need to remove your local image first using dcoker rmi hkubal/clairs:latest
). If the issue persists, please let us know, thanks!
Zhenxian
from clairs.
Thanks, the latest version produced proper VCF files with variants in them.
from clairs.
Related Issues (17)
- Interpreting the QUAL column HOT 2
- question: model for 5khz data HOT 4
- Nondeterminism in ClairS output HOT 1
- Germline variants present in output.vcf HOT 1
- Question: comparison with DRAGEN Somatic HOT 1
- Docker latest version HOT 1
- [Ask for insights on Illumina results regarding ClairS workflow/design choices] HOT 5
- [Inquiry for train dataset generation procedure] HOT 2
- Questions Regarding Heterozygous Variants, Somatic Mutations, and Phasing in ClairS Usage HOT 4
- add v4.3.0 model for clair3 params HOT 6
- Running with singularity HOT 2
- Bam files for SEQC2 samples HOT 1
- select_hetero_snp_for_phasing breaks for contigs where no variants are found HOT 3
- Option to call SNPs only HOT 1
- Haplotype filtering step keep stuck HOT 4
- Training for PacBio HiFi indel calling HOT 11
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