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View Code? Open in Web Editor NEWDeep proteome inference from peptide profiles
Home Page: https://ibpa.github.io/DeepPep/
License: Apache License 2.0
Deep proteome inference from peptide profiles
Home Page: https://ibpa.github.io/DeepPep/
License: Apache License 2.0
Code refactoring
Thank you for developed such a great tool to deal with protein inference!
Everything went smoothly when I used toy data, but once I feed my real data, DeepPep throw me an error:
/home/torch/install/bin/luajit: /home/torch/install/share/lua/5.1/nn/Container.lua:67:
In 1 module of nn.Sequential:
In 1 module of nn.Sequential:
/home/torch/install/share/lua/5.1/nn/THNN.lua:110: bad argument #2 to 'v' (input sequence smaller than kernel size. Got: 7, Expected: 8 at /home/torch/extra/nn/lib/THNN/generic/TemporalConvolution.c:34)
stack traceback:
[C]: in function 'v'
/home/torch/install/share/lua/5.1/nn/THNN.lua:110: in function 'TemporalConvolution_updateOutput'
...hare/lua/5.1/sparsenn/SparseBlockTemporalConvolution.lua:109: in function 'pri_updateOutput_column'
...hare/lua/5.1/sparsenn/SparseBlockTemporalConvolution.lua:124: in function <...hare/lua/5.1/sparsenn/SparseBlockTemporalConvolution.lua:117>
[C]: in function 'xpcall'
/home/torch/install/share/lua/5.1/nn/Container.lua:63: in function 'rethrowErrors'
...e/torch/install/share/lua/5.1/nn/Sequential.lua:44: in function <...e/torch/install/share/lua/5.1/nn/Sequential.lua:41>
[C]: in function 'xpcall'
/home/torch/install/share/lua/5.1/nn/Container.lua:63: in function 'rethrowErrors'
...e/torch/install/share/lua/5.1/nn/Sequential.lua:44: in function 'forward'
/mnt/d/MSTools/DeepPep/CExperiment.lua:33: in function 'roundTrip'
trainPred.lua:37: in main chunk
[C]: in function 'dofile'
...hang/torch/install/lib/luarocks/rocks/trepl/scm-1/bin/th:150: in main chunk
[C]: at 0x7fa77820ff50
WARNING: If you see a stack trace below, it doesn't point to the place where this error occurred. Please use only the one above.
stack traceback:
[C]: in function 'error'
/home/torch/install/share/lua/5.1/nn/Container.lua:67: in function 'rethrowErrors'
...e/torch/install/share/lua/5.1/nn/Sequential.lua:44: in function 'forward'
/mnt/d/MSTools/DeepPep/CExperiment.lua:33: in function 'roundTrip'
trainPred.lua:37: in main chunk
[C]: in function 'dofile'
...hang/torch/install/lib/luarocks/rocks/trepl/scm-1/bin/th:150: in main chunk
[C]: at 0x7fa77820ff50
Could you please help me check with it?
Thanks!
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