Comments (2)
I just updated pblat based on the latest blat v36x2, you can try to compile with the latest code.
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It seems that the issue still exists. I attached a valgrind report for the regularly compiled pblat
which can be reproduced by running valgrind ./pblat -threads=1 ./pblat-report/01.fa ./pblat-report/astral-scopdom-seqres-all-test.fa /tmp/pblat-c.psl
.
pblat_valgrind.txt
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Related Issues (19)
- pblat produces empty output file HOT 1
- installation fatal error 'openssl/ssl.h' file not found HOT 5
- Internal error jkOwnLib/trans3.c 71 HOT 2
- [malloc] error with protein query and DNA database HOT 1
- Segmentation fault core dumped on large genome HOT 1
- should update htslib version
- Bad file descriptor HOT 1
- installation issue (make: *** [all] Error 1) HOT 3
- Reading query from list HOT 1
- multiple definition with GCC > 10
- push new tag HOT 1
- shared memory HOT 1
- Time usage is the same between normal blat and pblat HOT 6
- update to blat v36x2? HOT 1
- installation issue HOT 2
- segmentation fault HOT 4
- empty tmp files HOT 1
- compile error: undefined reference to `gzgetc_' HOT 1
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