inm7/jubrain-anatomy-toolbox

JuBrain Anatomy Toolbox

jubrain-anatomy-toolbox's Issues

Calculation of Maximum Probability Maps in v2.2

I need to calculate maximum probability maps for several regions (precisely, the amygdala subregions), but this option does not seem to be available anymore in the v2.2 release. The manual on the Jülich homepage ( https://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html ) still contains this feature and I cannot find an updated manual. Is there still a way to do this in the new release?

Best wishes,
Maurizio

Fixed download - zipping bug in v3.0 distribution from Oct 2022

Hi,

Thanks a lot for this valuable software. I have been using it for over 12 years and it has always worked very well for me. However, today I faced an issue with it for the first time while setting up my new PC (Windows 10 Pro, Matlab 2022b) and thought of reporting it here along with the solution in the hope that it will help others.

In a nutshell, it looks like the current compression process is additionally zipping the JuBrain_Data_v30.mat into its own compressed folder. Currently, to use the software, that file must be unzipped and moved in the toolbox's root folder to complete the installation process, so that JuBrain_Data_v30.mat can then be selected when the user is prompted to "Select JuBrain Data file" (for some reason the .nii version is not visible via the GUI on my system). This is very easy to fix, so I am attaching a version of the toolbox with the fixed name and folder structure below.

On two other minor points:

1. The link to the official download webpage is broken - no file was downloaded from the forwarded link (notice the "Invalid date" warning in the screenshot below)

https://www.fz-juelich.de/en/inm/inm-7/resources/jubrain-anatomy-toolbox/jubrain-toolbox/toolbox_3/@@download/file

2. As it has been noted in the other Issues, currently one has to change the folder name from "jubrain-anatomy-toolbox-master" to "Anatomy" for the toolbox to appear within the spm12 GUI toolbox toggle.

Here is a version of the toolbox with the correct name and folder structure: https://drive.google.com/drive/folders/1qnaQtaM-ibJYbBX0RwAH2CBVAHV4bUtm?usp=sharing

Thanks again and best wishes,
Stav

Version 3.0 doesn't launch from the Toolbox toggle in SPM anymore

Hey, thanks for your work on this useful toolbox. In all previous versions, we added the anatomy toolbox to the Toolbox folder in our SPM distribution. Anatomy Toolbox would then show up in the Toolbox toggle in the SPM GUI. This is no longer the case, and your manual doesn't specify a different install method. How should we set this up?

Thanks,

Douglas Garrett
Max Planck UCL Centre for Computational Psychiatry and Ageing Research
Berlin, Germany