Comments (2)
jhennies
commented on August 15, 2024
- Connected components
- merge small objects
Merge this into instance segmentation panel?
- apply single-type segmentations
Merge this into semantic segmentation panel?
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jhennies
commented on August 15, 2024
- Connected components
- merge small objects
Merge this into instance segmentation panel?
Yes, this is how I'm currently doing it (committed to branch develop).
- apply single-type segmentations
Merge this into semantic segmentation panel?
No. This logic will be removed, instead a button will be added to "merge all instances". When clicked, all instances of the currently selected segmentation will be merged to one single label.
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Related Issues (20)
- CebraEM: Table in MoBIE project misses anchors
- CebraEM: Add a cluster setup json
- CebraEM: Quantile normalization terribly inefficient when mask has objects with large bounding boxes HOT 4
- Mobie project validation fails HOT 1
- quantile_norm snakejob requires more than 32G memory HOT 2
- Python KeyError at final segmentation: Manually initialized 'segmentations' in config file HOT 3
- Error in rule quantile norm, KeyError: 'quantile_samples' at final segmentation HOT 4
- installation for linux fails on pc without cuda
- Missing 64x64 image cubes after stiching of segmentation
- include scaling function for post-processing
- Stitching works only for one beta value per segmentation HOT 1
- Error when exiting field of extracted area during gt annotation in napari
- Switch command line interfaces to click
- Reduce/Remove interactive elements
- Apply pre-commit with formatting/linting to the project
- Merge the three Python packages into one
- PyPI Packaging
- Bioconda packaging
- Invalid cpu configuration on slurm cluster
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